myRT

myRT report for GCA_002569225.1_ASM256922v1

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Seq: NVGN01000113.1 Bacillus pseudomycoides strain AFS077796 AFS077796_99_C9_Contig113_140514, whole genome shotgun sequence (7058 bp)
Overview 1 RT 1: 1415-6299 bp Neighborhood of RT #1 [1415, 6640] COG5263 FN3 DUF3238 RVT_N RVT-GII GIIM Feature: gene Location: 1415-2143 bp Feature: gene Location: 2289-4229 bp Feature: domain Description: COG5263 Location: 2421-2721 bp Feature: domain Description: COG5263 Location: 2421 -2721 bp Feature: domain Description: FN3 Location: 2835-3051 bp Feature: domain Description: FN3 Location: 2835-3051 bp Feature: domain Description: DUF3238 Location: 3645-4095 bp Feature: domain Description: DUF3238 Location: 3645-4095 bp Feature: gene Location: 4955-6640 bp Feature: RT Description: RVT_N Location: 5039-5285 bp Feature: RT Description: RVT_N Location: 5039-5285 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5339-5999 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5339-5999 bp Feature: domain Description: GIIM Note: maturase Location: 6065-6299 bp Feature: domain Description: GIIM Note: maturase Location: 6065-6299 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG5263 (Glucan-binding domain (YG repeat) ), FN3 (smart00060), DUF3238 (pfam11579), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: NVGN01000053.1 Bacillus pseudomycoides strain AFS077796 AFS077796_99_C9_Contig53_140514, whole genome shotgun sequence (14036 bp)
Overview 1 RT 1: 9906-14009 bp Neighborhood of RT #1 [9906, 14035] T4SS-DNA_transf PolY_Pol_V_umuC RVT-GII Intron_maturas2 HNHc PRK03103 Rve Feature: gene Location: 9906-10217 bp Feature: domain Description: T4SS-DNA_transf Location: 9933-10110 bp Feature: domain Description: T4SS-DNA_transf Location: 9933-10110 bp Feature: gene Location: 10229-10483 bp Feature: domain Description: PolY_Pol_V_umuC Location: 10232-10478 bp Feature: domain Description: PolY_Pol_V_umuC Location: 102 32 -10478 bp Feature: gene Location: 11150-12961 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11414-12245 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11414-12 2 45 bp Feature: domain Description: Intron_maturas2 Location: 12326-12659 bp Feature: domain Description: Intron_maturas2 Location: 12 32 6-12 659 bp Feature: domain Description: HNHc Note: nucleases Location: 12755-12932 bp Feature: domain Description: HNHc Note: nucleases Location: 12 755-12 932 bp Feature: gene Location: 13224-13484 bp Feature: domain Description: PRK03103 Location: 13239-13473 bp Feature: domain Description: PRK03103 Location: 132 39-13473 bp Feature: gene Location: 13547-14035 bp Feature: domain Description: Rve Location: 13550-14009 bp Feature: domain Description: Rve Location: 13550-14009 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PolY_Pol_V_umuC (cd01700), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PRK03103 (DNA polymerase IV; Reviewed), Rve (COG3316), T4SS-DNA_transf (pfam02534)

Seq: NVGN01000057.1 Bacillus pseudomycoides strain AFS077796 AFS077796_99_C9_Contig57_140514, whole genome shotgun sequence (107071 bp)
Overview 1 RT 1: 102510-106053 bp Neighborhood of RT #1 [102510, 106139] DUF3994 DUF4352 DUF5105 RVT-GII GIIM Feature: gene Location: 102510-103472 bp Feature: domain Description: DUF3994 Location: 102954-103263 bp Feature: domain Description: DUF3 994 Location: 102954-103 263 bp Feature: gene Location: 103705-104760 bp Feature: domain Description: DUF4352 Location: 103819-104140 bp Feature: domain Description: DUF43 52 Location: 103 819-104140 bp Feature: domain Description: DUF5105 Location: 104206-104755 bp Feature: domain Description: DUF5105 Location: 104206-104755 bp Feature: gene Location: 105222-106139 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 105426-105585 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 105426-105585 bp Feature: domain Description: GIIM Note: maturase Location: 105837-106053 bp Feature: domain Description: GIIM Note: maturase Location: 10583 7-106053 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3994 (pfam13159), DUF4352 (pfam11611), DUF5105 (pfam17118), RVT-GII, GIIM (pfam08388)

Seq: NVGN01000071.1 Bacillus pseudomycoides strain AFS077796 AFS077796_99_C9_Contig71_140514, whole genome shotgun sequence (48847 bp)
Overview 1 RT 1: 29469-34458 bp Neighborhood of RT #1 [29469, 34458] zf-IS66 DDE_Tnp_IS66 DDE_Tnp_IS66_C PDDEXK_2 RVT_N RVT-GII GIIM HNHc PDDEXK_2 Feature: gene Location: 29469-31049 bp Feature: domain Description: zf-IS66 Location: 29850-29982 bp Feature: domain Description: zf-IS66 Location: 29850-29982 bp Feature: domain Description: DDE_Tnp_IS66 Location: 30048-30873 bp Feature: domain Description: DDE_Tnp_IS66 Location: 3004 8-30873 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 30894-31017 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 30894 -31017 bp Feature: gene Location: 31132-31494 bp Feature: domain Description: PDDEXK_2 Location: 31252-31477 bp Feature: domain Description: PDDEXK_2 Location: 31252-314 77 bp Feature: gene Location: 31484-33280 bp Feature: RT Description: RVT_N Location: 31532-31775 bp Feature: RT Description: RVT_N Location: 31532-31775 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31832-32501 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31832-32501 bp Feature: domain Description: GIIM Note: maturase Location: 32561-32795 bp Feature: domain Description: GIIM Note: maturase Location: 32561-32795 bp Feature: domain Description: HNHc Note: nucleases Location: 32996-33161 bp Feature: domain Description: HNHc Note: nucleases Location: 32996-33161 bp Feature: gene Location: 33855-34124 bp Feature: domain Description: PDDEXK_2 Location: 33882-34113 bp Feature: domain Description: PDDEXK_2 Location: 33882-34 113 bp Feature: gene Location: 34093-34458 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), PDDEXK_2 (pfam12784), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: NVGN01000097.1 Bacillus pseudomycoides strain AFS077796 AFS077796_99_C9_Contig97_140514, whole genome shotgun sequence (3000 bp)
Overview 1 RT 1: 1-2818 bp Neighborhood of RT #1 [1, 2871] DUF1738 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 1-306 bp Feature: domain Description: DUF1738 Location: 73-226 bp Feature: domain Description: DUF1738 Location: 73-226 bp Feature: gene Location: 1018-2871 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1282-2122 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1282-2122 bp Feature: domain Description: Intron_maturas2 Location: 2212-2560 bp Feature: domain Description: Intron_maturas2 Location: 2212-25 60 bp Feature: domain Description: HNHc Note: nucleases Location: 2653-2818 bp Feature: domain Description: HNHc Note: nucleases Location: 265 3-2818 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF1738 (pfam08401)