myRT

myRT report for GCA_002569945.1_ASM256994v1

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Seq: NVHE01000115.1 Bacillus pseudomycoides strain AFS074367 AFS074367_104_A11_Contig115_140523, whole genome shotgun sequence (17320 bp)
Overview 1 RT 1: 1469-8853 bp Neighborhood of RT #1 [1469, 8853] Uup ABC_tran_CTD BaxI_1 RVT-GII GIIM HNHc AcrR Feature: gene Location: 1469-3361 bp Feature: domain Description: Uup Location: 1472-3062 bp Feature: domain Description: Uup Location: 1 472-3062 bp Feature: domain Description: ABC_tran_CTD Location: 3143-3338 bp Feature: domain Description: ABC_tran_CTD Location: 31 43-3338 bp Feature: gene Location: 3437-4168 bp Feature: domain Description: BaxI_1 Location: 3452-4157 bp Feature: domain Description: BaxI_1 Location: 3452-41 57 bp Feature: gene Location: 5123-6985 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5417-6122 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 541 7-61 22 bp Feature: domain Description: GIIM Note: maturase Location: 6221-6428 bp Feature: domain Description: GIIM Note: maturase Location: 6221 -6428 bp Feature: domain Description: HNHc Note: nucleases Location: 6731-6905 bp Feature: domain Description: HNHc Note: nucleases Location: 6731 -6905 bp Feature: gene Location: 7708-8082 bp Feature: domain Description: AcrR Location: 7732-8005 bp Feature: domain Description: AcrR Location: 7732-8005 bp Feature: gene Location: 8497-8853 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Uup (COG0488), ABC_tran_CTD (pfam16326), BaxI_1 (pfam12811), RVT-GII, GIIM (pfam08388), HNHc (smart00507), AcrR (COG1309)

Seq: NVHE01000050.1 Bacillus pseudomycoides strain AFS074367 AFS074367_104_A11_Contig50_140523, whole genome shotgun sequence (29272 bp)
Overview 1 RT 1: 3-5489 bp Neighborhood of RT #1 [3, 5698] DDE_Tnp_1 RVT-GII GIIM DUF4352 DUF5105 DUF3994 Feature: gene Location: 3-1457 bp Feature: domain Description: DDE_Tnp_1 Location: 384-1182 bp Feature: domain Description: DDE_Tnp_1 Location: 384-1182 bp Feature: gene Location: 1487-1774 bp Feature: gene Location: 2068-2985 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2272-2431 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 2 72 -2 431 bp Feature: domain Description: GIIM Note: maturase Location: 2683-2899 bp Feature: domain Description: GIIM Note: maturase Location: 2 683-2 899 bp Feature: gene Location: 3449-4504 bp Feature: domain Description: DUF4352 Location: 3563-3884 bp Feature: domain Description: DUF4352 Location: 3563-3884 bp Feature: domain Description: DUF5105 Location: 3950-4499 bp Feature: domain Description: DUF5105 Location: 3950-4499 bp Feature: gene Location: 4736-5698 bp Feature: domain Description: DUF3994 Location: 5180-5489 bp Feature: domain Description: DUF3994 Location: 5180-5489 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DDE_Tnp_1 (pfam01609), DUF4352 (pfam11611), DUF5105 (pfam17118), DUF3994 (pfam13159)

Seq: NVHE01000054.1 Bacillus pseudomycoides strain AFS074367 AFS074367_104_A11_Contig54_140523, whole genome shotgun sequence (2303 bp)
Overview 1 RT 1: 105-2300 bp Neighborhood of RT #1 [105, 2300] RVT_N RVT-GII GIIM Feature: gene Location: 105-1754 bp Feature: RT Description: RVT_N Location: 153-399 bp Feature: RT Description: RVT_N Location: 153 -3 99 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 453-1113 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 453 -1113 bp Feature: domain Description: GIIM Note: maturase Location: 1179-1413 bp Feature: domain Description: GIIM Note: maturase Location: 1179-1413 bp Feature: gene Location: 2130-2300 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: NVHE01000085.1 Bacillus pseudomycoides strain AFS074367 AFS074367_104_A11_Contig85_140523, whole genome shotgun sequence (27698 bp)
Overview 1 RT 1: 6128-11870 bp 2 RT 2: 15436-19311 bp Neighborhood of RT #1 [6128, 11870] Peptidase_M78 RVT-GII Intron_maturas2 HNHc DUF1738 Neighborhood of RT #2 [15436, 19311] Spr RVT-GII Intron_maturas2 HNHc TraC-F-type Feature: gene Location: 6128-7120 bp Feature: gene Location: 7213-8613 bp Feature: domain Description: Peptidase_M78 Location: 7297-7522 bp Feature: domain Description: Peptidase_M78 Location: 7297-7522 bp Feature: gene Location: 8738-10555 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9002-9833 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9002-9833 bp Feature: domain Description: Intron_maturas2 Location: 9908-10202 bp Feature: domain Description: Intron_maturas2 Location: 9908-10202 bp Feature: domain Description: HNHc Note: nucleases Location: 10373-10526 bp Feature: domain Description: HNHc Note: nucleases Location: 10373-10526 bp Feature: gene Location: 11147-11596 bp Feature: domain Description: DUF1738 Location: 11360-11513 bp Feature: domain Description: DUF1738 Location: 11360-11513 bp Feature: gene Location: 11589-11870 bp Feature: gene Location: 15436-16035 bp Feature: gene Location: 16085-16552 bp Feature: domain Description: Spr Location: 16145-16535 bp Feature: domain Description: Spr Location: 1614 5-16535 bp Feature: gene Location: 16669-17481 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16675-16756 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16675-16756 bp Feature: domain Description: Intron_maturas2 Location: 16828-17125 bp Feature: domain Description: Intron_maturas2 Location: 16828-17125 bp Feature: domain Description: HNHc Note: nucleases Location: 17302-17455 bp Feature: domain Description: HNHc Note: nucleases Location: 17302-174 55 bp Feature: gene Location: 17554-18543 bp Feature: domain Description: TraC-F-type Location: 17560-18493 bp Feature: domain Description: TraC-F-type Location: 17560-184 93 bp Feature: gene Location: 18550-19311 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1738 (pfam08401), Peptidase_M78 (pfam06114), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), Spr (COG0791), TraC-F-type (TIGR02746)