myRT

myRT report for GCA_002571245.1_ASM257124v1

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Seq: NVEE01000043.1 Bacillus thuringiensis strain AFS059526 AFS059526_105_F9_Contig43_140523, whole genome shotgun sequence (44576 bp)
Overview 1 RT 1: 41398-44499 bp Neighborhood of RT #1 [41398, 44528] Rve RVT-GII Intron_maturas2 HNHc Feature: gene Location: 41398-41556 bp Feature: domain Description: Rve Location: 41416-41554 bp Feature: domain Description: Rve Location: 41 41 6-41 554 bp Feature: gene Location: 41820-42119 bp Feature: gene Location: 42819-44528 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42981-43803 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42981 -43803 bp Feature: domain Description: Intron_maturas2 Location: 43884-44178 bp Feature: domain Description: Intron_maturas2 Location: 43884-441 78 bp Feature: domain Description: HNHc Note: nucleases Location: 44325-44499 bp Feature: domain Description: HNHc Note: nucleases Location: 44325-44499 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Rve (COG3316), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: NVEE01000046.1 Bacillus thuringiensis strain AFS059526 AFS059526_105_F9_Contig46_140523, whole genome shotgun sequence (28267 bp)
Overview 1 RT 1: 23184-28251 bp Neighborhood of RT #1 [23184, 28265] PRK13922 PRK13927 RVT-GII HNHc PRK00024 Feature: gene Location: 23184-24035 bp Feature: domain Description: PRK13922 Location: 23187-24015 bp Feature: domain Description: PRK1392 2 Location: 2 3187-2 4015 bp Feature: gene Location: 24077-25096 bp Feature: domain Description: PRK13927 Location: 24095-25085 bp Feature: domain Description: PRK1392 7 Location: 2 4095-2 5085 bp Feature: gene Location: 25418-27289 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25739-26447 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 5739-2 6447 bp Feature: domain Description: HNHc Note: nucleases Location: 27041-27209 bp Feature: domain Description: HNHc Note: nucleases Location: 2 7041-2 72 09 bp Feature: gene Location: 27990-28265 bp Feature: domain Description: PRK00024 Location: 28002-28251 bp Feature: domain Description: PRK0002 4 Location: 2 8002 -2 82 51 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13922 (rod shape-determining protein MreC; Provisional), PRK13927 (rod shape-determining protein MreB; Provisional), RVT-GII, HNHc (smart00507), PRK00024 (DNA repair protein RadC)

Seq: NVEE01000051.1 Bacillus thuringiensis strain AFS059526 AFS059526_105_F9_Contig51_140523, whole genome shotgun sequence (39031 bp)
Overview 1 RT 1: 12579-18324 bp Neighborhood of RT #1 [12579, 19178] RVT_N RVT-GII GIIM HNHc DEXDc Feature: gene Location: 12579-13292 bp Feature: gene Location: 13309-14016 bp Feature: gene Location: 14133-15941 bp Feature: domain Description: RVT_N Location: 14184-14424 bp Feature: domain Description: RVT_N Location: 14184-14424 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14484-15138 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14484-1513 8 bp Feature: domain Description: GIIM Note: maturase Location: 15201-15435 bp Feature: domain Description: GIIM Note: maturase Location: 15201-1543 5 bp Feature: domain Description: HNHc Note: nucleases Location: 15648-15795 bp Feature: domain Description: HNHc Note: nucleases Location: 15648-15795 bp Feature: gene Location: 16287-16517 bp Feature: gene Location: 16545-19178 bp Feature: domain Description: DEXDc Location: 17373-18324 bp Feature: domain Description: DEXDc Location: 173 73 -183 24 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DEXDc (smart00487)

Seq: NVEE01000055.1 Bacillus thuringiensis strain AFS059526 AFS059526_105_F9_Contig55_140523, whole genome shotgun sequence (2820 bp)
Overview 1 RT 1: 711-2818 bp Neighborhood of RT #1 [711, 2818] RVT-GII HNHc Feature: gene Location: 711-2501 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1008-1704 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1008-1704 bp Feature: domain Description: HNHc Note: nucleases Location: 2244-2376 bp Feature: domain Description: HNHc Note: nucleases Location: 224 4 -2376 bp Feature: gene Location: 2567-2818 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507)

Seq: NVEE01000005.1 Bacillus thuringiensis strain AFS059526 AFS059526_105_F9_Contig5_140523, whole genome shotgun sequence (60229 bp)
Overview 1 RT 1: 8721-11962 bp Neighborhood of RT #1 [8721, 11970] PRK06760 RVT-GII DDE_Tnp_1 Feature: gene Location: 8721-9419 bp Feature: domain Description: PRK06760 Location: 8727-9399 bp Feature: domain Description: PRK06760 Location: 8727-9399 bp Feature: gene Location: 9436-9600 bp Feature: gene Location: 10513-10935 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10516-10861 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 105 16-10861 bp Feature: gene Location: 11439-11684 bp Feature: gene Location: 11755-11970 bp Feature: domain Description: DDE_Tnp_1 Location: 11779-11962 bp Feature: domain Description: DDE_Tnp_1 Location: 11779-11962 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK06760 (hypothetical protein; Provisional), RVT-GII, DDE_Tnp_1 (pfam01609)