myRT

myRT report for GCA_002571825.1_ASM257182v1

Download annotations/find similar RTs

Seq: NVJN01000015.1 Bacillus toyonensis strain AFS062328 AFS062328_73_H11_Contig15_140411, whole genome shotgun sequence (318136 bp)
Overview 1 RT 1: 17593-21440 bp Neighborhood of RT #1 [17593, 21463] PRK10420 RVT-GII PRK10420 DUF4870 Feature: gene Location: 17593-17916 bp Feature: domain Description: PRK10420 Location: 17605-17914 bp Feature: domain Description: PRK1 0420 Location: 1 7605-1 791 4 bp Feature: gene Location: 18043-18345 bp Feature: gene Location: 18681-19001 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18741-18942 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 8741 -1 8942 bp Feature: gene Location: 19191-20849 bp Feature: domain Description: PRK10420 Location: 19194-20847 bp Feature: domain Description: PRK1 0420 Location: 1 91 94-20847 bp Feature: gene Location: 21146-21463 bp Feature: domain Description: DUF4870 Location: 21164-21440 bp Feature: domain Description: DUF4870 Location: 21 1 64-21 440 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10420 (L-lactate permease; Provisional), RVT-GII, DUF4870 (pfam09685)

Seq: NVJN01000029.1 Bacillus toyonensis strain AFS062328 AFS062328_73_H11_Contig29_140411, whole genome shotgun sequence (208191 bp)
Overview 1 RT 1: 107336-112996 bp Neighborhood of RT #1 [107336, 113166] cxxc_20_cxxc Arm-DNA-bind_4 Phage_int_SAM_3 INT_ICEBs1_C_like RVT-UG17 SLATT_5 LAGLIDADG_3 Feature: gene Location: 107336-107551 bp Feature: domain Description: cxxc_20_cxxc Location: 107345-107480 bp Feature: domain Description: cxxc_2 0_cxxc Location: 107345-107480 bp Feature: gene Location: 107916-109028 bp Feature: domain Description: Arm-DNA-bind_4 Location: 107955-108090 bp Feature: domain Description: Arm-DNA-bind_4 Location: 107955-108090 bp Feature: domain Description: Phage_int_SAM_3 Location: 108120-108282 bp Feature: domain Description: Phage_int_SAM_3 Location: 10812 0-1082 82 bp Feature: domain Description: INT_ICEBs1_C_like Location: 108444-108975 bp Feature: domain Description: INT_ICEBs1_C_like Location: 108444-108975 bp Feature: gene Location: 109393-110763 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 109621-110206 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 10962 1-1102 06 bp Feature: gene Location: 110773-111360 bp Feature: domain Description: SLATT_5 Location: 110806-111334 bp Feature: domain Description: SLATT_5 Location: 110806-111334 bp Feature: gene Location: 111826-113166 bp Feature: domain Description: LAGLIDADG_3 Location: 112774-112996 bp Feature: domain Description: LAGLIDADG_3 Location: 112 774-112 996 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT cxxc_20_cxxc (TIGR04104), Arm-DNA-bind_4 (pfam14657), Phage_int_SAM_3 (pfam14659), INT_ICEBs1_C_like (cd01189), RVT-UG17, SLATT_5 (pfam18160), LAGLIDADG_3 (pfam14528)

Seq: NVJN01000054.1 Bacillus toyonensis strain AFS062328 AFS062328_73_H11_Contig54_140411, whole genome shotgun sequence (13478 bp)
Overview 1 RT 1: 10161-13386 bp Neighborhood of RT #1 [10161, 13475] COG1787 KOG4768 RVT-GII Toprim_2 Feature: gene Location: 10161-10481 bp Feature: domain Description: COG1787 Location: 10170-10443 bp Feature: domain Description: COG1787 Location: 10170-10443 bp Feature: gene Location: 10606-11220 bp Feature: domain Description: KOG4768 Location: 10654-11215 bp Feature: domain Description: KOG4768 Location: 10654-11215 bp Feature: gene Location: 11331-12419 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11595-12405 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11595-12405 bp Feature: gene Location: 12931-13074 bp Feature: gene Location: 13197-13475 bp Feature: domain Description: Toprim_2 Location: 13254-13386 bp Feature: domain Description: Toprim_2 Location: 13 254-13 3 86 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG1787 (Endonuclease, HJR/Mrr/RecB family ), KOG4768 (KOG4768, Mitochondrial mRNA maturase ), RVT-GII, Toprim_2 (pfam13155)