myRT

myRT report for GCA_002571845.1_ASM257184v1

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Seq: NVJO01000011.1 Bacillus pseudomycoides strain AFS062254 AFS062254_96_E6_Contig11_140514, whole genome shotgun sequence (54863 bp)
Overview 1 RT 1: 20113-25354 bp Neighborhood of RT #1 [20113, 25386] Rve PDDEXK_2 RVT_N RVT-GII GIIM HNHc PDDEXK_2 zf-IS66 DDE_Tnp_IS66 DDE_Tnp_IS66_C Feature: gene Location: 20113-20367 bp Feature: domain Description: Rve Location: 20122-20365 bp Feature: domain Description: Rve Location: 201 22-20365 bp Feature: gene Location: 20740-21009 bp Feature: domain Description: PDDEXK_2 Location: 20767-20998 bp Feature: domain Description: PDDEXK_2 Location: 20767-20998 bp Feature: gene Location: 21584-23380 bp Feature: RT Description: RVT_N Location: 21632-21875 bp Feature: RT Description: RVT_N Location: 21 632-21 875 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21932-22601 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 932-22601 bp Feature: domain Description: GIIM Note: maturase Location: 22661-22895 bp Feature: domain Description: GIIM Note: maturase Location: 22661 -22895 bp Feature: domain Description: HNHc Note: nucleases Location: 23096-23261 bp Feature: domain Description: HNHc Note: nucleases Location: 23096-23261 bp Feature: gene Location: 23370-23732 bp Feature: domain Description: PDDEXK_2 Location: 23490-23715 bp Feature: domain Description: PDDEXK_2 Location: 23490-2371 5 bp Feature: gene Location: 23815-25386 bp Feature: domain Description: zf-IS66 Location: 24187-24319 bp Feature: domain Description: zf-IS66 Location: 241 87-2431 9 bp Feature: domain Description: DDE_Tnp_IS66 Location: 24385-25210 bp Feature: domain Description: DDE_Tnp_IS66 Location: 24385-2521 0 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 25231-25354 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 25231 -25354 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Rve (COG3316), PDDEXK_2 (pfam12784), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817)

Seq: NVJO01000013.1 Bacillus pseudomycoides strain AFS062254 AFS062254_96_E6_Contig13_140514, whole genome shotgun sequence (34963 bp)
Overview 1 RT 1: 3764-10630 bp Neighborhood of RT #1 [3764, 10839] DDE_Tnp_1 MFS_MefA_like RVT-GII GIIM DUF4352 DUF5105 DUF3994 Feature: gene Location: 3764-4126 bp Feature: domain Description: DDE_Tnp_1 Location: 3860-4115 bp Feature: domain Description: DDE_Tnp_1 Location: 3860-4115 bp Feature: gene Location: 4664-6037 bp Feature: domain Description: MFS_MefA_like Location: 4826-5966 bp Feature: domain Description: MFS_MefA_like Location: 482 6-5966 bp Feature: gene Location: 7210-8127 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7414-7573 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7414-7573 bp Feature: domain Description: GIIM Note: maturase Location: 7825-8041 bp Feature: domain Description: GIIM Note: maturase Location: 782 5-8041 bp Feature: gene Location: 8589-9644 bp Feature: domain Description: DUF4352 Location: 8703-9024 bp Feature: domain Description: DUF4352 Location: 8703-902 4 bp Feature: domain Description: DUF5105 Location: 9090-9639 bp Feature: domain Description: DUF5105 Location: 9090-9639 bp Feature: gene Location: 9877-10839 bp Feature: domain Description: DUF3994 Location: 10321-10630 bp Feature: domain Description: DUF3994 Location: 1032 1-10630 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1 (pfam01609), MFS_MefA_like (cd06173), RVT-GII, GIIM (pfam08388), DUF4352 (pfam11611), DUF5105 (pfam17118), DUF3994 (pfam13159)

Seq: NVJO01000041.1 Bacillus pseudomycoides strain AFS062254 AFS062254_96_E6_Contig41_140514, whole genome shotgun sequence (9113 bp)
Overview 1 RT 1: 1415-8304 bp Neighborhood of RT #1 [1415, 8304] COG5263 FN3 DUF3238 RVT_N RVT-GII GIIM Feature: gene Location: 1415-2143 bp Feature: gene Location: 2289-4229 bp Feature: domain Description: COG5263 Location: 2421-2721 bp Feature: domain Description: COG5263 Location: 2421-2721 bp Feature: domain Description: FN3 Location: 2835-3051 bp Feature: domain Description: FN3 Location: 283 5-3 051 bp Feature: domain Description: DUF3238 Location: 3645-4095 bp Feature: domain Description: DUF3 23 8 Location: 3 645-4095 bp Feature: gene Location: 4955-6640 bp Feature: RT Description: RVT_N Location: 5039-5285 bp Feature: RT Description: RVT_N Location: 503 9-5285 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5339-5999 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53 3 9-5999 bp Feature: domain Description: GIIM Note: maturase Location: 6065-6299 bp Feature: domain Description: GIIM Note: maturase Location: 6065-6299 bp Feature: gene Location: 6861-7316 bp Feature: gene Location: 7333-8304 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG5263 (Glucan-binding domain (YG repeat) ), FN3 (smart00060), DUF3238 (pfam11579), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: NVJO01000070.1 Bacillus pseudomycoides strain AFS062254 AFS062254_96_E6_Contig70_140514, whole genome shotgun sequence (36077 bp)
Overview 1 RT 1: 16468-22116 bp 2 RT 2: 32390-35957 bp Neighborhood of RT #1 [16468, 22116] RVT-GII Intron_maturas2 HNHc DUF1738 Neighborhood of RT #2 [32390, 35968] T4SS-DNA_transf PolY_Pol_V_umuC RVT-GII Intron_maturas2 HNHc PRK03103 Feature: gene Location: 16468-17472 bp Feature: gene Location: 17534-18805 bp Feature: gene Location: 18831-20684 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19095-19935 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19095-19935 bp Feature: domain Description: Intron_maturas2 Location: 20025-20373 bp Feature: domain Description: Intron_maturas2 Location: 20025-20373 bp Feature: domain Description: HNHc Note: nucleases Location: 20466-20631 bp Feature: domain Description: HNHc Note: nucleases Location: 204 66-20631 bp Feature: gene Location: 21396-21773 bp Feature: domain Description: DUF1738 Location: 21540-21693 bp Feature: domain Description: DUF1738 Location: 2154 0-21693 bp Feature: gene Location: 21835-22116 bp Feature: gene Location: 32390-32701 bp Feature: domain Description: T4SS-DNA_transf Location: 32417-32594 bp Feature: domain Description: T4 SS-DNA_transf Location: 324 17-32594 bp Feature: gene Location: 32713-32967 bp Feature: domain Description: PolY_Pol_V_umuC Location: 32716-32962 bp Feature: domain Description: PolY_Pol_V_umuC Location: 32716-32962 bp Feature: gene Location: 33634-35445 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33898-34729 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33898-34 729 bp Feature: domain Description: Intron_maturas2 Location: 34810-35143 bp Feature: domain Description: Intron_maturas2 Location: 34 810-3514 3 bp Feature: domain Description: HNHc Note: nucleases Location: 35239-35416 bp Feature: domain Description: HNHc Note: nucleases Location: 35239-354 16 bp Feature: gene Location: 35708-35968 bp Feature: domain Description: PRK03103 Location: 35723-35957 bp Feature: domain Description: PRK03103 Location: 35723-35957 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF1738 (pfam08401), T4SS-DNA_transf (pfam02534), PolY_Pol_V_umuC (cd01700), PRK03103 (DNA polymerase IV; Reviewed)