myRT

myRT report for GCA_002572065.1_ASM257206v1

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Seq: NVJG01000133.1 Bacillus pseudomycoides strain AFS064122 AFS064122_79_B10_Contig133_140604, whole genome shotgun sequence (5560 bp)
Overview 1 RT 1: 2059-5544 bp Neighborhood of RT #1 [2059, 5555] DUF1738 RVT-GII Intron_maturas2 HNHc Peptidase_M78 Feature: gene Location: 2059-2340 bp Feature: gene Location: 2402-2782 bp Feature: domain Description: DUF1738 Location: 2543-2699 bp Feature: domain Description: DUF1 738 Location: 2543-2699 bp Feature: gene Location: 3374-5191 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3638-4463 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3638-4463 bp Feature: domain Description: Intron_maturas2 Location: 4544-4838 bp Feature: domain Description: Intron_maturas2 Location: 4544-4838 bp Feature: domain Description: HNHc Note: nucleases Location: 5009-5162 bp Feature: domain Description: HNHc Note: nucleases Location: 5009-51 62 bp Feature: gene Location: 5316-5555 bp Feature: domain Description: Peptidase_M78 Location: 5400-5544 bp Feature: domain Description: Peptidase_M78 Location: 5400-5544 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1738 (pfam08401), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), Peptidase_M78 (pfam06114)

Seq: NVJG01000200.1 Bacillus pseudomycoides strain AFS064122 AFS064122_79_B10_Contig200_140604, whole genome shotgun sequence (5805 bp)
Overview 1 RT 1: 318-5800 bp Neighborhood of RT #1 [318, 5800] MobL RVT_N RVT-GII GIIM HNHc Feature: gene Location: 318-1526 bp Feature: domain Description: MobL Location: 357-1425 bp Feature: domain Description: MobL Location: 357-142 5 bp Feature: gene Location: 1523-1990 bp Feature: gene Location: 2888-4732 bp Feature: RT Description: RVT_N Location: 2945-3188 bp Feature: RT Description: RVT_N Location: 2 945-3188 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3245-3920 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32 45-392 0 bp Feature: domain Description: GIIM Note: maturase Location: 3995-4229 bp Feature: domain Description: GIIM Note: maturase Location: 3995-42 2 9 bp Feature: domain Description: HNHc Note: nucleases Location: 4430-4601 bp Feature: domain Description: HNHc Note: nucleases Location: 4430-4601 bp Feature: gene Location: 4825-5109 bp Feature: gene Location: 5102-5800 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), MobL (pfam18555)

Seq: NVJG01000023.1 Bacillus pseudomycoides strain AFS064122 AFS064122_79_B10_Contig2_140604, whole genome shotgun sequence (37848 bp)
Overview 1 RT 1: 26130-32235 bp Neighborhood of RT #1 [26130, 32306] DUF3994 DUF4352 DUF5105 RVT-GII GIIM MFS_MefA_like Feature: gene Location: 26130-27092 bp Feature: domain Description: DUF3994 Location: 26574-26883 bp Feature: domain Description: DUF3 994 Location: 26574-26883 bp Feature: gene Location: 27325-28380 bp Feature: domain Description: DUF4352 Location: 27439-27760 bp Feature: domain Description: DUF43 52 Location: 2743 9-27760 bp Feature: domain Description: DUF5105 Location: 27826-28375 bp Feature: domain Description: DUF5105 Location: 27826-283 75 bp Feature: gene Location: 29051-29761 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29255-29414 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29255-29414 bp Feature: domain Description: GIIM Note: maturase Location: 29666-29759 bp Feature: domain Description: GIIM Note: maturase Location: 29666-29759 bp Feature: gene Location: 30055-30246 bp Feature: gene Location: 30933-32306 bp Feature: domain Description: MFS_MefA_like Location: 31095-32235 bp Feature: domain Description: MFS_MefA_like Location: 3 1095-3 223 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3994 (pfam13159), DUF4352 (pfam11611), DUF5105 (pfam17118), RVT-GII, GIIM (pfam08388), MFS_MefA_like (cd06173)

Seq: NVJG01000037.1 Bacillus pseudomycoides strain AFS064122 AFS064122_79_B10_Contig41_140604, whole genome shotgun sequence (14106 bp)
Overview 1 RT 1: 7878-12225 bp Neighborhood of RT #1 [7878, 12296] T4SS-DNA_transf PolY_Pol_V_umuC RVT-GII Intron_maturas2 HNHc PRK03103 Rve Feature: gene Location: 7878-8189 bp Feature: domain Description: T4SS-DNA_transf Location: 7905-8082 bp Feature: domain Description: T4 SS-DNA_transf Location: 7905-8082 bp Feature: gene Location: 8201-8455 bp Feature: domain Description: PolY_Pol_V_umuC Location: 8204-8450 bp Feature: domain Description: PolY_Pol_V_umuC Location: 8204 -84 50 bp Feature: gene Location: 9122-10933 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9386-10217 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9386-10217 bp Feature: domain Description: Intron_maturas2 Location: 10295-10631 bp Feature: domain Description: Intron_maturas2 Location: 10295-10631 bp Feature: domain Description: HNHc Note: nucleases Location: 10727-10904 bp Feature: domain Description: HNHc Note: nucleases Location: 10727-10904 bp Feature: gene Location: 11196-11456 bp Feature: domain Description: PRK03103 Location: 11211-11445 bp Feature: domain Description: PRK03103 Location: 11211-114 4 5 bp Feature: gene Location: 11589-12296 bp Feature: domain Description: Rve Location: 11613-12225 bp Feature: domain Description: Rve Location: 11613-12225 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK03103 (DNA polymerase IV; Reviewed), Rve (COG3316), T4SS-DNA_transf (pfam02534), PolY_Pol_V_umuC (cd01700), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: NVJG01000044.1 Bacillus pseudomycoides strain AFS064122 AFS064122_79_B10_Contig48_140604, whole genome shotgun sequence (14081 bp)
Overview 1 RT 1: 8007-13422 bp Neighborhood of RT #1 [8007, 13422] TraG_VirD4 TraG_VirD4 RVT-GII HNHc Feature: gene Location: 8007-9962 bp Feature: domain Description: TraG_VirD4 Location: 8073-8490 bp Feature: domain Description: TraG_VirD4 Location: 8073-8490 bp Feature: domain Description: TraG_VirD4 Location: 8778-9261 bp Feature: domain Description: TraG_VirD4 Location: 8778-9261 bp Feature: gene Location: 10031-10159 bp Feature: gene Location: 10161-11993 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10461-11166 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10461-11166 bp Feature: domain Description: HNHc Note: nucleases Location: 11745-11877 bp Feature: domain Description: HNHc Note: nucleases Location: 11745 -11877 bp Feature: gene Location: 12287-12520 bp Feature: gene Location: 12721-13422 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507), TraG_VirD4

Seq: NVJG01000067.1 Bacillus pseudomycoides strain AFS064122 AFS064122_79_B10_Contig89_140604, whole genome shotgun sequence (2608 bp)
Overview 1 RT 1: 632-2432 bp Neighborhood of RT #1 [632, 2485] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 632-2485 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 896-1736 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 896 -1736 bp Feature: domain Description: Intron_maturas2 Location: 1826-2174 bp Feature: domain Description: Intron_maturas2 Location: 1826 -2174 bp Feature: domain Description: HNHc Note: nucleases Location: 2267-2432 bp Feature: domain Description: HNHc Note: nucleases Location: 226 7-2432 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)