myRT

myRT report for GCA_002572075.1_ASM257207v1

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Seq: NVJI01000154.1 Bacillus pseudomycoides strain AFS063129 AFS063129_119_E2_Contig176_140618, whole genome shotgun sequence (748 bp)
Overview 1 RT 1: 1-746 bp Neighborhood of RT #1 [1, 746] RVT-GII Feature: gene Location: 1-303 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 205-304 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 205-304 bp Feature: gene Location: 570-746 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: NVJI01000020.1 Bacillus pseudomycoides strain AFS063129 AFS063129_119_E2_Contig25_140618, whole genome shotgun sequence (37087 bp)
Overview 1 RT 1: 37-4035 bp Neighborhood of RT #1 [37, 4035] Lysozyme_like Spr RVT-GII HNHc Lysozyme_like Feature: gene Location: 37-771 bp Feature: domain Description: Lysozyme_like Location: 136-325 bp Feature: domain Description: Lysozyme_like Location: 136-32 5 bp Feature: domain Description: Spr Location: 364-754 bp Feature: domain Description: Spr Location: 364-754 bp Feature: gene Location: 784-2487 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 964-1669 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 964-1669 bp Feature: domain Description: HNHc Note: nucleases Location: 2233-2365 bp Feature: domain Description: HNHc Note: nucleases Location: 2 2 33-2 365 bp Feature: gene Location: 3336-3839 bp Feature: domain Description: Lysozyme_like Location: 3525-3822 bp Feature: domain Description: Lysozyme_like Location: 352 5-382 2 bp Feature: gene Location: 3844-4035 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Lysozyme_like (pfam13702), RVT-GII, HNHc (smart00507)

Seq: NVJI01000026.1 Bacillus pseudomycoides strain AFS063129 AFS063129_119_E2_Contig31_140618, whole genome shotgun sequence (2350 bp)
Overview 1 RT 1: 574-1905 bp Neighborhood of RT #1 [574, 2246] RVT_N RVT-GII GIIM Feature: gene Location: 574-801 bp Feature: RT Description: RVT_N Location: 658-790 bp Feature: RT Description: RVT_N Location: 658-790 bp Feature: gene Location: 1011-2246 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1014-1605 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1014-1605 bp Feature: domain Description: GIIM Note: maturase Location: 1671-1905 bp Feature: domain Description: GIIM Note: maturase Location: 1671-1905 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), RVT_N (pfam13655)

Seq: NVJI01000040.1 Bacillus pseudomycoides strain AFS063129 AFS063129_119_E2_Contig40_140618, whole genome shotgun sequence (42484 bp)
Overview 1 RT 1: 39137-42396 bp Neighborhood of RT #1 [39137, 42482] DUF3994 DUF4352 DUF5105 RVT-GII GIIM Feature: gene Location: 39137-40099 bp Feature: domain Description: DUF3994 Location: 39581-39890 bp Feature: domain Description: DUF3994 Location: 39581-39890 bp Feature: gene Location: 40331-41386 bp Feature: domain Description: DUF4352 Location: 40445-40766 bp Feature: domain Description: DUF4 352 Location: 4 04 4 5-4 0766 bp Feature: domain Description: DUF5105 Location: 40832-41381 bp Feature: domain Description: DUF5105 Location: 4 0832-4 1381 bp Feature: gene Location: 41850-42482 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41856-41928 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 1856-4 1928 bp Feature: domain Description: GIIM Note: maturase Location: 42180-42396 bp Feature: domain Description: GIIM Note: maturase Location: 4 2180-4 2396 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3994 (pfam13159), DUF4352 (pfam11611), DUF5105 (pfam17118), RVT-GII, GIIM (pfam08388)

Seq: NVJI01000076.1 Bacillus pseudomycoides strain AFS063129 AFS063129_119_E2_Contig95_140618, whole genome shotgun sequence (4082 bp)
Overview 1 RT 1: 3-1901 bp Neighborhood of RT #1 [3, 1960] RVT-GII LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 DDE_Tnp_IS66_C Feature: gene Location: 3-314 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9-264 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9-264 bp Feature: gene Location: 415-1275 bp Feature: domain Description: LZ_Tnp_IS66 Location: 520-730 bp Feature: domain Description: LZ_Tnp_IS66 Location: 5 20-730 bp Feature: domain Description: zf-IS66 Location: 754-886 bp Feature: domain Description: zf-IS66 Location: 75 4-886 bp Feature: domain Description: DDE_Tnp_IS66 Location: 946-1225 bp Feature: domain Description: DDE_Tnp_IS66 Location: 946-1225 bp Feature: gene Location: 1772-1960 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1781-1901 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1781-1901 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66_C (pfam13817), RVT-GII, LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050)