myRT

myRT report for GCA_002572455.1_ASM257245v1

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Seq: NVJU01000021.1 Bacillus toyonensis strain AFS061268 AFS061268_102_E8_Contig21_140514, whole genome shotgun sequence (26602 bp)
Overview 1 RT 1: 20238-25752 bp Neighborhood of RT #1 [20238, 25766] TraG_VirD4 TraG_VirD4 RVT-GII HNHc VirD4 Feature: gene Location: 20238-20447 bp Feature: gene Location: 20505-22448 bp Feature: domain Description: TraG_VirD4 Location: 20610-21048 bp Feature: domain Description: TraG_VirD4 Location: 2061 0-21 048 bp Feature: domain Description: TraG_VirD4 Location: 21078-21789 bp Feature: domain Description: TraG_VirD4 Location: 21 078-21 789 bp Feature: gene Location: 22619-24448 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22919-23621 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2291 9-23621 bp Feature: domain Description: HNHc Note: nucleases Location: 24200-24332 bp Feature: domain Description: HNHc Note: nucleases Location: 24200-24332 bp Feature: gene Location: 24736-24969 bp Feature: gene Location: 25170-25766 bp Feature: domain Description: VirD4 Location: 25251-25752 bp Feature: domain Description: VirD4 Location: 25251 -25752 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraG_VirD4, RVT-GII, HNHc (smart00507), VirD4 (COG3505)

Seq: NVJU01000035.1 Bacillus toyonensis strain AFS061268 AFS061268_102_E8_Contig35_140514, whole genome shotgun sequence (63593 bp)
Overview 1 RT 1: 51669-55427 bp Neighborhood of RT #1 [51669, 55432] RVT-UG2 Rve Feature: gene Location: 51669-51830 bp Feature: gene Location: 52158-52310 bp Feature: gene Location: 52374-53813 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 52626-53448 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 52 62 6-53448 bp Feature: gene Location: 54082-54372 bp Feature: gene Location: 54986-55432 bp Feature: domain Description: Rve Location: 55010-55427 bp Feature: domain Description: Rve Location: 55010-5542 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG2, Rve (COG3316)

Seq: NVJU01000060.1 Bacillus toyonensis strain AFS061268 AFS061268_102_E8_Contig60_140514, whole genome shotgun sequence (38196 bp)
Overview 1 RT 1: 665-4589 bp Neighborhood of RT #1 [665, 4589] RadC RVT-GII HNHc PRK00024 Feature: gene Location: 665-1030 bp Feature: domain Description: RadC Location: 695-1013 bp Feature: domain Description: RadC Location: 695-1013 bp Feature: gene Location: 1375-1554 bp Feature: gene Location: 1773-3656 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2070-2811 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2070-2811 bp Feature: domain Description: HNHc Note: nucleases Location: 3375-3543 bp Feature: domain Description: HNHc Note: nucleases Location: 3 3 75-3 543 bp Feature: gene Location: 3737-3949 bp Feature: domain Description: PRK00024 Location: 3806-3944 bp Feature: domain Description: PRK00024 Location: 3 806-3 944 bp Feature: gene Location: 4443-4589 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RadC (pfam04002), RVT-GII, HNHc (smart00507), PRK00024 (DNA repair protein RadC)

Seq: NVJU01000008.1 Bacillus toyonensis strain AFS061268 AFS061268_102_E8_Contig8_140514, whole genome shotgun sequence (46405 bp)
Overview 1 RT 1: 17647-21355 bp Neighborhood of RT #1 [17647, 21378] PRK10420 PRK10420 RVT-GII PRK10420 DUF4870 Feature: gene Location: 17647-17832 bp Feature: domain Description: PRK10420 Location: 17659-17737 bp Feature: domain Description: PRK104 20 Location: 17659-17737 bp Feature: domain Description: PRK10420 Location: 17743-17830 bp Feature: domain Description: PRK104 20 Location: 1774 3-17830 bp Feature: gene Location: 17959-18261 bp Feature: gene Location: 18597-18917 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18657-18858 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18657-18858 bp Feature: gene Location: 19106-20764 bp Feature: domain Description: PRK10420 Location: 19109-20762 bp Feature: domain Description: PRK104 20 Location: 19109-20762 bp Feature: gene Location: 21061-21378 bp Feature: domain Description: DUF4870 Location: 21079-21355 bp Feature: domain Description: DUF4 870 Location: 21079-21355 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10420 (L-lactate permease; Provisional), RVT-GII, DUF4870 (pfam09685)