myRT

myRT report for GCA_002573155.1_ASM257315v1

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Seq: MPHW01000027.1 Escherichia coli strain 8_Esco_CA-NL L0469b_contig_27, whole genome shotgun sequence (70833 bp)
Overview 1 RT 1: 43205-46270 bp Neighborhood of RT #1 [43205, 46270] RVT-GII GIIM RVT-GII Feature: gene Location: 43205-43375 bp Feature: gene Location: 43513-43692 bp Feature: gene Location: 43791-44312 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43797-44079 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43797-44079 bp Feature: domain Description: GIIM Note: maturase Location: 44127-44307 bp Feature: domain Description: GIIM Note: maturase Location: 441 27-44307 bp Feature: gene Location: 44340-44879 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 44670-44748 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 44670-44748 bp Feature: gene Location: 44910-45107 bp Feature: gene Location: 45365-46270 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: MPHW01000030.1 Escherichia coli strain 8_Esco_CA-NL L0469b_contig_30, whole genome shotgun sequence (30489 bp)
Overview 1 RT 1: 27355-30293 bp Neighborhood of RT #1 [27355, 30388] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 27355-27690 bp Feature: gene Location: 28143-28352 bp Feature: gene Location: 28487-30388 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28754-29585 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 8754-2 9585 bp Feature: domain Description: Intron_maturas2 Location: 29699-29957 bp Feature: domain Description: Intron_maturas2 Location: 2 9699-2 9957 bp Feature: domain Description: HNHc Note: nucleases Location: 30131-30293 bp Feature: domain Description: HNHc Note: nucleases Location: 30131-302 93 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: MPHW01000076.1 Escherichia coli strain 8_Esco_CA-NL L0469b_contig_76, whole genome shotgun sequence (58385 bp)
Overview 1 RT 1: 12638-16520 bp Neighborhood of RT #1 [12638, 16525] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 12638-13096 bp Feature: domain Description: dut Location: 12644-13091 bp Feature: domain Description: dut Location: 12644-13 091 bp Feature: gene Location: 13203-13799 bp Feature: domain Description: slmA Location: 13209-13785 bp Feature: domain Description: slmA Location: 13 209-13 785 bp Feature: gene Location: 13845-14804 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 13980-14529 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 13 980-14529 bp Feature: gene Location: 15102-15758 bp Feature: domain Description: pyrE Location: 15120-15753 bp Feature: domain Description: pyrE Location: 15120-15753 bp Feature: gene Location: 15809-16525 bp Feature: domain Description: rph Location: 15812-16520 bp Feature: domain Description: rph Location: 15812-16520 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dut (TIGR00576), slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173)

Seq: MPHW01000093.1 Escherichia coli strain 8_Esco_CA-NL L0469b_contig_93, whole genome shotgun sequence (2272 bp)
Overview 1 RT 1: 93-2269 bp Neighborhood of RT #1 [93, 2269] RVT-GII GIIM Feature: gene Location: 93-1616 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 366-1098 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 366-1098 bp Feature: domain Description: GIIM Note: maturase Location: 1173-1371 bp Feature: domain Description: GIIM Note: maturase Location: 1173-1371 bp Feature: gene Location: 1910-2269 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)