myRT

myRT report for GCA_002573375.1_ASM257337v1

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Seq: MPIJ01000015.1 Escherichia coli strain 17_Esco_HA-NL 127348d_contig_15, whole genome shotgun sequence (27549 bp)
Overview 1 RT 1: 19445-22822 bp Neighborhood of RT #1 [19445, 22827] PRK09413 RVT-GII RVT-GII GIIM PinE Feature: gene Location: 19445-19642 bp Feature: domain Description: PRK09413 Location: 19448-19610 bp Feature: domain Description: PRK0941 3 Location: 1 9448-1 961 0 bp Feature: gene Location: 19697-20047 bp Feature: gene Location: 20118-20531 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20439-20526 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20439-20526 bp Feature: gene Location: 20595-21470 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20601-21057 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20601 -21 057 bp Feature: domain Description: GIIM Note: maturase Location: 21105-21336 bp Feature: domain Description: GIIM Note: maturase Location: 21 1 05-21 336 bp Feature: gene Location: 21679-22080 bp Feature: gene Location: 22180-22827 bp Feature: domain Description: PinE Location: 22273-22822 bp Feature: domain Description: PinE Location: 22273-22822 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09413 (IS2 repressor TnpA; Reviewed), RVT-GII, GIIM (pfam08388), PinE (COG1961)

Seq: MPIJ01000029.1 Escherichia coli strain 17_Esco_HA-NL 127348d_contig_29, whole genome shotgun sequence (166159 bp)
Overview 1 RT 1: 137470-143501 bp Neighborhood of RT #1 [137470, 143501] AbiEii AbiEi_3_N AbiEi_3 RVT-UG5 nitrilase Phage_ASH Feature: gene Location: 137470-138390 bp Feature: domain Description: AbiEii Location: 137512-138253 bp Feature: domain Description: AbiEii Location: 137512 -1382 53 bp Feature: gene Location: 138377-139180 bp Feature: domain Description: AbiEi_3_N Location: 138410-138671 bp Feature: domain Description: AbiEi_3_N Location: 138410-138671 bp Feature: domain Description: AbiEi_3 Location: 138683-139139 bp Feature: domain Description: AbiEi_3 Location: 138683-139139 bp Feature: gene Location: 139475-142684 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 140003-140492 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 140003-140492 bp Feature: domain Description: nitrilase Location: 141998-142595 bp Feature: domain Description: nitrilase Location: 141998-142 595 bp Feature: gene Location: 142845-142985 bp Feature: domain Description: Phage_ASH Location: 142872-142965 bp Feature: domain Description: Phage_ASH Location: 142 872 -142 965 bp Feature: gene Location: 143031-143501 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AbiEii (pfam08843), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), RVT-UG5, nitrilase (cl11424), Phage_ASH (pfam10554)

Seq: MPIJ01000042.1 Escherichia coli strain 17_Esco_HA-NL 127348d_contig_42, whole genome shotgun sequence (49301 bp)
Overview 1 RT 1: 24127-28418 bp Neighborhood of RT #1 [24127, 28418] YesM RVT-GII GIIM RVT-GII Feature: gene Location: 24127-25389 bp Feature: domain Description: YesM Location: 24640-25381 bp Feature: domain Description: YesM Location: 24640-253 81 bp Feature: gene Location: 25419-25589 bp Feature: gene Location: 25939-26460 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25945-26227 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25945-26227 bp Feature: domain Description: GIIM Note: maturase Location: 26275-26455 bp Feature: domain Description: GIIM Note: maturase Location: 26275-26455 bp Feature: gene Location: 26488-27027 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26818-26896 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26818-26896 bp Feature: gene Location: 27058-27255 bp Feature: gene Location: 27513-28418 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YesM (COG2972), RVT-GII, GIIM (pfam08388)

Seq: MPIJ01000072.1 Escherichia coli strain 17_Esco_HA-NL 127348d_contig_72, whole genome shotgun sequence (2272 bp)
Overview 1 RT 1: 1-1935 bp Neighborhood of RT #1 [1, 2180] RVT-GII GIIM Feature: gene Location: 1-363 bp Feature: gene Location: 657-2180 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1662 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1662 bp Feature: domain Description: GIIM Note: maturase Location: 1737-1935 bp Feature: domain Description: GIIM Note: maturase Location: 1737-1935 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)