myRT

myRT report for GCA_002574105.1_ASM257410v1

Download annotations/find similar RTs

Seq: NUFL01000006.1 Bacillus megaterium strain AFS058060 AFS058060_70_F6_Contig12_140411, whole genome shotgun sequence (108343 bp)
Overview 1 RT 1: 80237-84528 bp Neighborhood of RT #1 [80237, 84539] DUF3231 DUF3231 RVT-GII GIIM YdeN PRK02833 Feature: gene Location: 80237-81241 bp Feature: domain Description: DUF3231 Location: 80252-80708 bp Feature: domain Description: DUF3231 Location: 80252-80708 bp Feature: domain Description: DUF3231 Location: 80744-81224 bp Feature: domain Description: DUF3231 Location: 80744-81 224 bp Feature: gene Location: 81486-81917 bp Feature: gene Location: 81951-82769 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81957-82593 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81 957-82593 bp Feature: domain Description: GIIM Note: maturase Location: 82659-82767 bp Feature: domain Description: GIIM Note: maturase Location: 82659-82767 bp Feature: gene Location: 83280-83846 bp Feature: domain Description: YdeN Location: 83289-83838 bp Feature: domain Description: YdeN Location: 83289-83838 bp Feature: gene Location: 84099-84539 bp Feature: domain Description: PRK02833 Location: 84153-84528 bp Feature: domain Description: PRK02833 Location: 841 53-84528 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3231 (pfam11553), RVT-GII, GIIM (pfam08388), YdeN (COG3545), PRK02833 (phosphate-starvation-inducible protein PsiE; Provisional)

Seq: NUFL01000054.1 Bacillus megaterium strain AFS058060 AFS058060_70_F6_Contig2_140411, whole genome shotgun sequence (1563026 bp)
Overview 1 RT 1: 1498701-1503092 bp Neighborhood of RT #1 [1498701, 1503130] DAO RVT-GII Intron_maturas2 HNHc RimL Feature: gene Location: 1498701-1499798 bp Feature: domain Description: DAO Location: 1498845-1499793 bp Feature: domain Description: DAO Location: 1498845-1499793 bp Feature: gene Location: 1499973-1500269 bp Feature: gene Location: 1500371-1502194 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1500635-1501469 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1500635-1501469 bp Feature: domain Description: Intron_maturas2 Location: 1501541-1501841 bp Feature: domain Description: Intron_maturas2 Location: 1501541-1501841 bp Feature: domain Description: HNHc Note: nucleases Location: 1502015-1502168 bp Feature: domain Description: HNHc Note: nucleases Location: 1502 015-1502 168 bp Feature: gene Location: 1502198-1502362 bp Feature: gene Location: 1502558-1503130 bp Feature: domain Description: RimL Location: 1502564-1503092 bp Feature: domain Description: RimL Location: 1502 564-1503092 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DAO (pfam01266), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), RimL (COG1670)

Seq: NUFL01000049.1 Bacillus megaterium strain AFS058060 AFS058060_70_F6_Contig31_140411, whole genome shotgun sequence (19547 bp)
Overview 1 RT 1: 1802-6136 bp Neighborhood of RT #1 [1802, 6136] DUF4046 DUF4046 RVT_N RVT-GII GIIM Feature: gene Location: 1802-2035 bp Feature: gene Location: 2123-2899 bp Feature: domain Description: DUF4046 Location: 2141-2327 bp Feature: domain Description: DUF4046 Location: 2141-23 27 bp Feature: domain Description: DUF4046 Location: 2408-2570 bp Feature: domain Description: DUF4046 Location: 2408-2570 bp Feature: gene Location: 4114-5538 bp Feature: RT Description: RVT_N Location: 4198-4441 bp Feature: RT Description: RVT_N Location: 4198-4441 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4498-5158 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4498-5158 bp Feature: domain Description: GIIM Note: maturase Location: 5224-5458 bp Feature: domain Description: GIIM Note: maturase Location: 5224-5458 bp Feature: gene Location: 5560-5799 bp Feature: gene Location: 5966-6136 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4046 (pfam13255), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: NUFL01000052.1 Bacillus megaterium strain AFS058060 AFS058060_70_F6_Contig34_140411, whole genome shotgun sequence (88555 bp)
Overview 1 RT 1: 27034-35242 bp Neighborhood of RT #1 [27034, 35242] EamA EamA CDO_I RVT_N RVT-GII GIIM HxlR MdaB RVT_N RVT-GII GIIM Feature: gene Location: 27034-27963 bp Feature: domain Description: EamA Location: 27067-27463 bp Feature: domain Description: EamA Location: 27067-274 63 bp Feature: domain Description: EamA Location: 27502-27910 bp Feature: domain Description: EamA Location: 27502-27910 bp Feature: gene Location: 27942-28574 bp Feature: domain Description: CDO_I Location: 28146-28470 bp Feature: domain Description: CDO_I Location: 2814 6-284 70 bp Feature: gene Location: 29465-31150 bp Feature: RT Description: RVT_N Location: 29549-29795 bp Feature: RT Description: RVT_N Location: 2954 9-29795 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29849-30509 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2984 9-30509 bp Feature: domain Description: GIIM Note: maturase Location: 30578-30809 bp Feature: domain Description: GIIM Note: maturase Location: 30578-30809 bp Feature: gene Location: 31182-31394 bp Feature: gene Location: 31433-31801 bp Feature: domain Description: HxlR Location: 31487-31778 bp Feature: domain Description: HxlR Location: 314 87-31778 bp Feature: gene Location: 31874-32401 bp Feature: domain Description: MdaB Location: 31877-32393 bp Feature: domain Description: MdaB Location: 31877-32393 bp Feature: gene Location: 33223-34908 bp Feature: RT Description: RVT_N Location: 33307-33553 bp Feature: RT Description: RVT_N Location: 33307-33553 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33607-34267 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33607-34 267 bp Feature: domain Description: GIIM Note: maturase Location: 34333-34567 bp Feature: domain Description: GIIM Note: maturase Location: 34 333-34 567 bp Feature: gene Location: 34940-35089 bp Feature: gene Location: 35105-35242 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT EamA (pfam00892), CDO_I (pfam05995), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HxlR (pfam01638), MdaB (COG2249)