myRT

myRT report for GCA_002576515.1_ASM257651v1

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Seq: NUKW01000114.1 Bacillus pseudomycoides strain AFS043018 AFS043018_104_E11_Contig114_140523, whole genome shotgun sequence (8790 bp)
Overview 1 RT 1: 3-2757 bp 2 RT 2: 5135-8327 bp Neighborhood of RT #1 [3, 2771] RVT-GII GIIM DDE_Tnp_1 Neighborhood of RT #2 [5135, 8680] RVT_N RVT-GII GIIM Feature: gene Location: 3-1208 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 288-927 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 288-927 bp Feature: domain Description: GIIM Note: maturase Location: 1002-1203 bp Feature: domain Description: GIIM Note: maturase Location: 1 002-1 203 bp Feature: gene Location: 1382-1561 bp Feature: gene Location: 1713-2771 bp Feature: domain Description: DDE_Tnp_1 Location: 2073-2757 bp Feature: domain Description: DDE_Tnp_1 Location: 2073-2757 bp Feature: gene Location: 5135-5284 bp Feature: gene Location: 5591-6061 bp Feature: gene Location: 7019-8680 bp Feature: domain Description: RVT_N Location: 7067-7313 bp Feature: domain Description: RVT_N Location: 7067-731 3 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7367-8027 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7367-8027 bp Feature: domain Description: GIIM Note: maturase Location: 8096-8327 bp Feature: domain Description: GIIM Note: maturase Location: 8096-8327 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DDE_Tnp_1 (pfam01609), RVT_N (pfam13655)

Seq: NUKW01000116.1 Bacillus pseudomycoides strain AFS043018 AFS043018_104_E11_Contig116_140523, whole genome shotgun sequence (24076 bp)
Overview 1 RT 1: 5119-10690 bp Neighborhood of RT #1 [5119, 10728] LPXTG_anchor RVT-GII HNHc RVT-GII TED COG4932 SpaA SpaA HTH_XRE Feature: gene Location: 5119-5265 bp Feature: gene Location: 5294-5650 bp Feature: domain Description: LPXTG_anchor Location: 5531-5642 bp Feature: domain Description: LPXTG_anchor Location: 5531-5642 bp Feature: gene Location: 5847-6926 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5865-6048 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5865-6048 bp Feature: domain Description: HNHc Note: nucleases Location: 6663-6834 bp Feature: domain Description: HNHc Note: nucleases Location: 6663-6834 bp Feature: gene Location: 6982-7680 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7219-7672 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72 19-7672 bp Feature: gene Location: 8476-10392 bp Feature: domain Description: TED Location: 8707-8968 bp Feature: domain Description: TED Location: 8707-8968 bp Feature: domain Description: COG4932 Location: 8989-9862 bp Feature: domain Description: COG4932 Location: 8989-9862 bp Feature: domain Description: SpaA Location: 9949-10141 bp Feature: domain Description: SpaA Location: 9949-10141 bp Feature: domain Description: SpaA Location: 10219-10375 bp Feature: domain Description: SpaA Location: 102 19-10375 bp Feature: gene Location: 10510-10728 bp Feature: domain Description: HTH_XRE Location: 10531-10690 bp Feature: domain Description: HTH_XRE Location: 10531-10690 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LPXTG_anchor (TIGR01167), RVT-GII, HNHc (smart00507), TED (pfam08341), COG4932 (Uncharacterized surface anchored protein ), SpaA (pfam17802), HTH_XRE (smart00530)

Seq: NUKW01000023.1 Bacillus pseudomycoides strain AFS043018 AFS043018_104_E11_Contig23_140523, whole genome shotgun sequence (35388 bp)
Overview 1 RT 1: 24246-30359 bp Neighborhood of RT #1 [24246, 30430] DUF3994 DUF4352 DUF5105 RVT-GII GIIM MFS_MefA_like Feature: gene Location: 24246-25208 bp Feature: domain Description: DUF3994 Location: 24690-24999 bp Feature: domain Description: DUF3 994 Location: 24690-24999 bp Feature: gene Location: 25441-26496 bp Feature: domain Description: DUF4352 Location: 25555-25876 bp Feature: domain Description: DUF43 52 Location: 25555-25876 bp Feature: domain Description: DUF5105 Location: 25942-26491 bp Feature: domain Description: DUF5105 Location: 25942-26491 bp Feature: gene Location: 26960-27877 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27164-27323 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27164-273 23 bp Feature: domain Description: GIIM Note: maturase Location: 27575-27791 bp Feature: domain Description: GIIM Note: maturase Location: 27575-27791 bp Feature: gene Location: 28171-28362 bp Feature: gene Location: 29057-30430 bp Feature: domain Description: MFS_MefA_like Location: 29219-30359 bp Feature: domain Description: MFS_MefA_like Location: 29219-3 03 59 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3994 (pfam13159), DUF4352 (pfam11611), DUF5105 (pfam17118), RVT-GII, GIIM (pfam08388), MFS_MefA_like (cd06173)

Seq: NUKW01000027.1 Bacillus pseudomycoides strain AFS043018 AFS043018_104_E11_Contig27_140523, whole genome shotgun sequence (215619 bp)
Overview 1 RT 1: 101737-107514 bp Neighborhood of RT #1 [101737, 107534] InsQ RVT-UG14 COG3910 Feature: gene Location: 101737-101958 bp Feature: gene Location: 102217-103680 bp Feature: domain Description: InsQ Location: 102478-103609 bp Feature: domain Description: InsQ Location: 1024 78-103609 bp Feature: gene Location: 103957-105501 bp Feature: RT Description: RVT-UG14 Note: UG14 RT Location: 104308-104665 bp Feature: RT Description: RVT-UG14 Note: UG14 RT Location: 104 308-104 665 bp Feature: gene Location: 106084-106542 bp Feature: gene Location: 106815-107534 bp Feature: domain Description: COG3910 Location: 106824-107514 bp Feature: domain Description: COG3910 Location: 106824 -107514 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsQ (COG0675), RVT-UG14, COG3910 (Predicted ATPase )

Seq: NUKW01000039.1 Bacillus pseudomycoides strain AFS043018 AFS043018_104_E11_Contig39_140523, whole genome shotgun sequence (10809 bp)
Overview 1 RT 1: 210-3684 bp Neighborhood of RT #1 [210, 3788] PRK03103 RVT-GII Intron_maturas2 HNHc PolY_Pol_V_umuC T4SS-DNA_transf Feature: gene Location: 210-470 bp Feature: domain Description: PRK03103 Location: 225-459 bp Feature: domain Description: PRK03103 Location: 225 -45 9 bp Feature: gene Location: 733-2544 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 997-1828 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 997-1828 bp Feature: domain Description: Intron_maturas2 Location: 1909-2215 bp Feature: domain Description: Intron_maturas2 Location: 1909-2215 bp Feature: domain Description: HNHc Note: nucleases Location: 2338-2515 bp Feature: domain Description: HNHc Note: nucleases Location: 2338-25 15 bp Feature: gene Location: 3091-3465 bp Feature: domain Description: PolY_Pol_V_umuC Location: 3094-3460 bp Feature: domain Description: PolY_Pol_V_umuC Location: 3094-3460 bp Feature: gene Location: 3477-3788 bp Feature: domain Description: T4SS-DNA_transf Location: 3504-3684 bp Feature: domain Description: T4SS-DNA_transf Location: 35 04-3684 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK03103 (DNA polymerase IV; Reviewed), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PolY_Pol_V_umuC (cd01700), T4SS-DNA_transf (pfam02534)

Seq: NUKW01000045.1 Bacillus pseudomycoides strain AFS043018 AFS043018_104_E11_Contig45_140523, whole genome shotgun sequence (14719 bp)
Overview 1 RT 1: 1894-7915 bp Neighborhood of RT #1 [1894, 7915] T4SS-DNA_transf TraG_VirD4 RVT-GII Intron_maturas2 HNHc TraG-D_C Feature: gene Location: 1894-2325 bp Feature: gene Location: 2467-4227 bp Feature: domain Description: T4SS-DNA_transf Location: 2926-3721 bp Feature: domain Description: T4SS-DNA_transf Location: 2926 -3721 bp Feature: domain Description: TraG_VirD4 Location: 4003-4168 bp Feature: domain Description: TraG_VirD4 Location: 4003-416 8 bp Feature: gene Location: 4777-6591 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5041-5869 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5041-586 9 bp Feature: domain Description: Intron_maturas2 Location: 5947-6241 bp Feature: domain Description: Intron_maturas2 Location: 5947-6 241 bp Feature: domain Description: HNHc Note: nucleases Location: 6388-6565 bp Feature: domain Description: HNHc Note: nucleases Location: 6 388-6 56 5 bp Feature: gene Location: 6699-7715 bp Feature: domain Description: TraG-D_C Location: 6705-7020 bp Feature: domain Description: TraG-D_C Location: 6 705-7020 bp Feature: gene Location: 7787-7915 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT T4SS-DNA_transf (pfam02534), TraG_VirD4, RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), TraG-D_C (pfam12696)