myRT

myRT report for GCA_002577655.1_ASM257765v1

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Seq: NUMC01000122.1 Bacillus sp. AFS040349 AFS040349_58_D10_Contig122_140312, whole genome shotgun sequence (24357 bp)
Overview 1 RT 1: 5593-9290 bp Neighborhood of RT #1 [5593, 9304] RVT-GII FeoA Feature: gene Location: 5593-5799 bp Feature: gene Location: 6921-7049 bp Feature: gene Location: 7009-7911 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7120-7777 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 71 20-7777 bp Feature: gene Location: 8772-8981 bp Feature: gene Location: 9062-9304 bp Feature: domain Description: FeoA Location: 9086-9290 bp Feature: domain Description: FeoA Location: 9086-9290 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, FeoA (smart00899)

Seq: NUMC01000130.1 Bacillus sp. AFS040349 AFS040349_58_D10_Contig130_140312, whole genome shotgun sequence (50340 bp)
Overview 1 RT 1: 39285-44639 bp Neighborhood of RT #1 [39285, 44674] DUF1779 CuRO_D2_2dMcoN_like CuRO_D2_2dMcoN_like CuRO_D2_2dMcoN_like RVT-GII SNc HDGYP Feature: gene Location: 39285-40001 bp Feature: domain Description: DUF1779 Location: 39429-39999 bp Feature: domain Description: DUF1779 Location: 3942 9-39999 bp Feature: gene Location: 40160-41764 bp Feature: domain Description: CuRO_D2_2dMcoN_like Location: 40367-40655 bp Feature: domain Description: CuRO_D2 _2 dMcoN_like Location: 40367-40655 bp Feature: domain Description: CuRO_D2_2dMcoN_like Location: 40730-41228 bp Feature: domain Description: CuRO_D2 _2 dMcoN_like Location: 40730-412 2 8 bp Feature: domain Description: CuRO_D2_2dMcoN_like Location: 41366-41708 bp Feature: domain Description: CuRO_D2 _2 dMcoN_like Location: 41366-41708 bp Feature: gene Location: 42476-42739 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42479-42731 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42 479-42 731 bp Feature: gene Location: 43753-44025 bp Feature: domain Description: SNc Location: 43861-44002 bp Feature: domain Description: SNc Location: 43861-44002 bp Feature: gene Location: 44045-44674 bp Feature: domain Description: HDGYP Location: 44141-44639 bp Feature: domain Description: HDGYP Location: 44141-44639 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1779 (pfam08680), CuRO_D2_2dMcoN_like (cd04202), RVT-GII, SNc (smart00318), HDGYP (COG2206)

Seq: NUMC01000151.1 Bacillus sp. AFS040349 AFS040349_58_D10_Contig151_140312, whole genome shotgun sequence (2531 bp)
Overview 1 RT 1: 2-2399 bp Neighborhood of RT #1 [2, 2428] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 2-187 bp Feature: gene Location: 617-2428 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 881-1712 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 881-1712 bp Feature: domain Description: Intron_maturas2 Location: 1790-2153 bp Feature: domain Description: Intron_maturas2 Location: 1790-2153 bp Feature: domain Description: HNHc Note: nucleases Location: 2231-2399 bp Feature: domain Description: HNHc Note: nucleases Location: 223 1-23 99 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: NUMC01000192.1 Bacillus sp. AFS040349 AFS040349_58_D10_Contig192_140312, whole genome shotgun sequence (1743 bp)
Overview 1 RT 1: 3-1736 bp Neighborhood of RT #1 [3, 1741] RVT-GII GIIM Feature: gene Location: 3-164 bp Feature: gene Location: 533-1741 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 842-1472 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 84 2-14 72 bp Feature: domain Description: GIIM Note: maturase Location: 1553-1736 bp Feature: domain Description: GIIM Note: maturase Location: 1553-1736 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: NUMC01000037.1 Bacillus sp. AFS040349 AFS040349_58_D10_Contig37_140312, whole genome shotgun sequence (45222 bp)
Overview 1 RT 1: 4687-10218 bp Neighborhood of RT #1 [4687, 10538] PKc PAP2_like_2 RVT-GII GIIM PRK15098 Feature: gene Location: 4687-5358 bp Feature: domain Description: PKc Location: 4801-5161 bp Feature: domain Description: PKc Location: 4801-5 161 bp Feature: gene Location: 5384-6082 bp Feature: domain Description: PAP2_like_2 Location: 5519-6041 bp Feature: domain Description: PAP2_like_2 Location: 5 5 19-6041 bp Feature: gene Location: 6190-7458 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6415-7030 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6415 -7030 bp Feature: domain Description: GIIM Note: maturase Location: 7084-7303 bp Feature: domain Description: GIIM Note: maturase Location: 7084-7303 bp Feature: gene Location: 7993-8163 bp Feature: gene Location: 8235-10538 bp Feature: domain Description: PRK15098 Location: 8442-10218 bp Feature: domain Description: PRK15 098 Location: 8442-10218 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PKc (cd00180), PAP2_like_2 (cd03392), RVT-GII, GIIM (pfam08388), PRK15098 (beta-glucosidase BglX)

Seq: NUMC01000043.1 Bacillus sp. AFS040349 AFS040349_58_D10_Contig43_140312, whole genome shotgun sequence (39956 bp)
Overview 1 RT 1: 23242-30663 bp Neighborhood of RT #1 [23242, 30663] Slt35_like NlpD RVT-GII Intron_maturas2 HNHc MLTF_like Feature: gene Location: 23242-23835 bp Feature: gene Location: 23891-24631 bp Feature: domain Description: Slt35_like Location: 24005-24176 bp Feature: domain Description: Slt35_like Location: 24005-24176 bp Feature: domain Description: NlpD Location: 24197-24566 bp Feature: domain Description: NlpD Location: 24197-2456 6 bp Feature: gene Location: 24738-26561 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25002-25833 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25002-25833 bp Feature: domain Description: Intron_maturas2 Location: 25983-26208 bp Feature: domain Description: Intron_maturas2 Location: 25983-26 208 bp Feature: domain Description: HNHc Note: nucleases Location: 26379-26532 bp Feature: domain Description: HNHc Note: nucleases Location: 26 379-26 532 bp Feature: gene Location: 27144-28298 bp Feature: domain Description: MLTF_like Location: 28170-28296 bp Feature: domain Description: MLTF_like Location: 28170-28296 bp Feature: gene Location: 28309-30663 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Slt35_like, NlpD (COG0739), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), MLTF_like

Seq: NUMC01000006.1 Bacillus sp. AFS040349 AFS040349_58_D10_Contig6_140312, whole genome shotgun sequence (71164 bp)
Overview 1 RT 1: 20133-31116 bp Neighborhood of RT #1 [20133, 31127] sbcd SbcD_C addA_Gpos RVT-GII Intron_maturas2 addA_Gpos addB_Gpos Feature: gene Location: 20133-21314 bp Feature: domain Description: sbcd Location: 20136-20889 bp Feature: domain Description: sbcd Location: 20136-20889 bp Feature: domain Description: SbcD_C Location: 20961-21225 bp Feature: domain Description: SbcD_C Location: 20961-21225 bp Feature: gene Location: 21393-23825 bp Feature: domain Description: addA_Gpos Location: 21426-23823 bp Feature: domain Description: addA_Gpos Location: 21426-23823 bp Feature: gene Location: 24165-25718 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24429-25260 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24429-25260 bp Feature: domain Description: Intron_maturas2 Location: 25440-25632 bp Feature: domain Description: Intron_maturas2 Location: 25440-25632 bp Feature: gene Location: 26306-27643 bp Feature: domain Description: addA_Gpos Location: 26342-27635 bp Feature: domain Description: addA_Gpos Location: 26342-27 635 bp Feature: gene Location: 27636-31127 bp Feature: domain Description: addB_Gpos Location: 27639-31116 bp Feature: domain Description: addB_Gpos Location: 27 639-31116 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT sbcd (TIGR00619), SbcD_C (pfam12320), addA_Gpos (TIGR02785), RVT-GII, Intron_maturas2 (pfam01348), addB_Gpos (TIGR02773)

Seq: NUMC01000093.1 Bacillus sp. AFS040349 AFS040349_58_D10_Contig93_140312, whole genome shotgun sequence (8593 bp)
Overview 1 RT 1: 290-4338 bp Neighborhood of RT #1 [290, 4355] HNHc RVT_N RVT-GII GIIM DEXDc_RapA SSL2 Feature: gene Location: 290-778 bp Feature: gene Location: 1093-1443 bp Feature: domain Description: HNHc Note: nucleases Location: 1168-1351 bp Feature: domain Description: HNHc Note: nucleases Location: 1168 -1351 bp Feature: gene Location: 1500-2828 bp Feature: RT Description: RVT_N Location: 1554-1800 bp Feature: RT Description: RVT_N Location: 1554-18 00 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1854-2508 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18 54-2508 bp Feature: domain Description: GIIM Note: maturase Location: 2571-2781 bp Feature: domain Description: GIIM Note: maturase Location: 2571-278 1 bp Feature: gene Location: 3042-3374 bp Feature: gene Location: 3402-4355 bp Feature: domain Description: DEXDc_RapA Location: 3411-3606 bp Feature: domain Description: DEXDc_RapA Location: 3411-3606 bp Feature: domain Description: SSL2 Location: 4182-4338 bp Feature: domain Description: SSL2 Location: 418 2-4338 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HNHc (smart00507), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DEXDc_RapA (cd18011), SSL2 (COG1061)