myRT

myRT report for GCA_002577745.1_ASM257774v1

Download annotations/find similar RTs

Seq: NUMG01000023.1 Bacillus cereus strain AFS040105 AFS040105_100_B2_Contig23_140514, whole genome shotgun sequence (151745 bp)
Overview 1 RT 1: 96063-100948 bp 2 RT 2: 129014-135712 bp Neighborhood of RT #1 [96063, 100948] AbrB SMI1_KNR4 RVT-GII MRJP Neighborhood of RT #2 [129014, 135759] PinE YolD RVT-GII PolY_Pol_V_umuC DUF1963 Feature: gene Location: 96063-96341 bp Feature: domain Description: AbrB Location: 96066-96327 bp Feature: domain Description: AbrB Location: 96066-96327 bp Feature: gene Location: 96549-97079 bp Feature: domain Description: SMI1_KNR4 Location: 96648-97050 bp Feature: domain Description: SMI1 _KNR4 Location: 96648-97050 bp Feature: gene Location: 97078-98223 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 97147-97846 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 971 47-97846 bp Feature: gene Location: 98833-99948 bp Feature: domain Description: MRJP Location: 99091-99880 bp Feature: domain Description: MRJP Location: 99091 -99880 bp Feature: gene Location: 100370-100948 bp Feature: gene Location: 129014-129631 bp Feature: domain Description: PinE Location: 129029-129623 bp Feature: domain Description: PinE Location: 1 29029-1 29623 bp Feature: gene Location: 130194-130532 bp Feature: domain Description: YolD Location: 130254-130530 bp Feature: domain Description: YolD Location: 1 30254-1 30530 bp Feature: gene Location: 130926-132641 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 131247-131979 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 31 247-1 31 979 bp Feature: gene Location: 133428-134693 bp Feature: domain Description: PolY_Pol_V_umuC Location: 133467-134499 bp Feature: domain Description: PolY_Pol_V_umuC Location: 1 33467-1 34499 bp Feature: gene Location: 135061-135759 bp Feature: domain Description: DUF1963 Location: 135154-135712 bp Feature: domain Description: DUF1 963 Location: 1 351 54-1 3571 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AbrB (pfam05145), SMI1_KNR4 (smart00860), RVT-GII, MRJP (pfam03022), PinE (COG1961), YolD (pfam08863), PolY_Pol_V_umuC (cd01700), DUF1963 (pfam09234)

Seq: NUMG01000027.1 Bacillus cereus strain AFS040105 AFS040105_100_B2_Contig27_140514, whole genome shotgun sequence (112619 bp)
Overview 1 RT 1: 98386-103800 bp Neighborhood of RT #1 [98386, 106313] NlpD NLPC_P60 RVT-GII Intron_maturas2 HNHc CwlT_like TrbL Feature: gene Location: 98386-99219 bp Feature: domain Description: NlpD Location: 98392-98785 bp Feature: domain Description: NlpD Location: 98392 -98785 bp Feature: domain Description: NLPC_P60 Location: 98899-99199 bp Feature: domain Description: NLPC_P60 Location: 98899-99199 bp Feature: gene Location: 99237-99404 bp Feature: gene Location: 99412-101235 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 99676-100510 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 99676-100510 bp Feature: domain Description: Intron_maturas2 Location: 100582-100927 bp Feature: domain Description: Intron_maturas2 Location: 100582 -10092 7 bp Feature: domain Description: HNHc Note: nucleases Location: 101056-101212 bp Feature: domain Description: HNHc Note: nucleases Location: 101056-1012 12 bp Feature: gene Location: 101812-103032 bp Feature: domain Description: CwlT_like Location: 102640-103021 bp Feature: domain Description: CwlT_like Location: 102 640-10302 1 bp Feature: gene Location: 103032-106313 bp Feature: domain Description: TrbL Location: 103275-103800 bp Feature: domain Description: TrbL Location: 1032 75-103800 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CwlT_like, TrbL (pfam04610), NlpD (COG0739), NLPC_P60 (pfam00877), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: NUMG01000002.1 Bacillus cereus strain AFS040105 AFS040105_100_B2_Contig2_140514, whole genome shotgun sequence (180735 bp)
Overview 1 RT 1: 112238-116871 bp Neighborhood of RT #1 [112238, 116873] YxeA PolY_Pol_V_umuC RVT-GII Intron_maturas2 HNHc PRK03103 YolD Feature: gene Location: 112238-112603 bp Feature: domain Description: YxeA Location: 112241-112589 bp Feature: domain Description: YxeA Location: 112241-112589 bp Feature: gene Location: 112763-113524 bp Feature: domain Description: PolY_Pol_V_umuC Location: 112838-113519 bp Feature: domain Description: PolY_Pol_V_umuC Location: 11283 8-113 519 bp Feature: gene Location: 114072-115883 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 114336-115167 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1143 3 6-115167 bp Feature: domain Description: Intron_maturas2 Location: 115245-115584 bp Feature: domain Description: Intron_maturas2 Location: 115245-115584 bp Feature: domain Description: HNHc Note: nucleases Location: 115677-115854 bp Feature: domain Description: HNHc Note: nucleases Location: 115677-115854 bp Feature: gene Location: 115876-116535 bp Feature: domain Description: PRK03103 Location: 115966-116527 bp Feature: domain Description: PRK03 103 Location: 115966-116527 bp Feature: gene Location: 116532-116873 bp Feature: domain Description: YolD Location: 116595-116871 bp Feature: domain Description: YolD Location: 116595-116871 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YxeA (COG5294), PolY_Pol_V_umuC (cd01700), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PRK03103 (DNA polymerase IV; Reviewed), YolD (pfam08863)

Seq: NUMG01000042.1 Bacillus cereus strain AFS040105 AFS040105_100_B2_Contig42_140514, whole genome shotgun sequence (13125 bp)
Overview 1 RT 1: 7728-13108 bp Neighborhood of RT #1 [7728, 13122] RVT-GII DDE_Tnp_IS240 beta_rpt_yvtn beta_rpt_yvtn beta_rpt_yvtn beta_rpt_yvtn beta_rpt_yvtn beta_rpt_yvtn Feature: gene Location: 7728-7886 bp Feature: gene Location: 8668-8895 bp Feature: gene Location: 10073-11839 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10370-11063 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10370-11063 bp Feature: gene Location: 11851-12291 bp Feature: domain Description: DDE_Tnp_IS240 Location: 11857-12220 bp Feature: domain Description: DDE_Tnp_IS24 0 Location: 11857-12220 bp Feature: gene Location: 12409-13122 bp Feature: domain Description: beta_rpt_yvtn Location: 12412-12484 bp Feature: domain Description: beta_rpt_yvtn Location: 124 12-124 84 bp Feature: domain Description: beta_rpt_yvtn Location: 12496-12598 bp Feature: domain Description: beta_rpt_yvtn Location: 124 96-12598 bp Feature: domain Description: beta_rpt_yvtn Location: 12619-12733 bp Feature: domain Description: beta_rpt_yvtn Location: 12619-12733 bp Feature: domain Description: beta_rpt_yvtn Location: 12757-12868 bp Feature: domain Description: beta_rpt_yvtn Location: 12757-12868 bp Feature: domain Description: beta_rpt_yvtn Location: 12880-12988 bp Feature: domain Description: beta_rpt_yvtn Location: 12880-12988 bp Feature: domain Description: beta_rpt_yvtn Location: 13009-13108 bp Feature: domain Description: beta_rpt_yvtn Location: 13009-13108 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, DDE_Tnp_IS240 (pfam13610), beta_rpt_yvtn (TIGR02276)