myRT

myRT report for GCA_002580755.1_ASM258075v1

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Seq: NUSG01000043.1 Bacillus pseudomycoides strain AFS045932 AFS045932_104_G1_Contig43_140523, whole genome shotgun sequence (47637 bp)
Overview 1 RT 1: 11209-17424 bp Neighborhood of RT #1 [11209, 17424] InsE PHA02517 RVT-GII Feature: gene Location: 11209-11484 bp Feature: domain Description: InsE Location: 11218-11467 bp Feature: domain Description: InsE Location: 1 1 21 8-1 1 467 bp Feature: gene Location: 11626-12432 bp Feature: domain Description: PHA02517 Location: 11689-12379 bp Feature: domain Description: PHA0251 7 Location: 1 1 689-1 2379 bp Feature: gene Location: 12571-13023 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12721-13021 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 2721 -1 3021 bp Feature: gene Location: 14967-15857 bp Feature: gene Location: 17227-17424 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII

Seq: NUSG01000053.1 Bacillus pseudomycoides strain AFS045932 AFS045932_104_G1_Contig53_140523, whole genome shotgun sequence (36059 bp)
Overview 1 RT 1: 3-3723 bp Neighborhood of RT #1 [3, 3932] DDE_Tnp_1 RVT-GII DUF4352 DUF5105 DUF3994 Feature: gene Location: 3-470 bp Feature: domain Description: DDE_Tnp_1 Location: 63-165 bp Feature: domain Description: DDE_Tnp_1 Location: 63-165 bp Feature: gene Location: 723-1220 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 927-1041 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 92 7-1041 bp Feature: gene Location: 1683-2738 bp Feature: domain Description: DUF4352 Location: 1797-2118 bp Feature: domain Description: DUF4352 Location: 1797-2 118 bp Feature: domain Description: DUF5105 Location: 2184-2733 bp Feature: domain Description: DUF5105 Location: 2 184-2 733 bp Feature: gene Location: 2970-3932 bp Feature: domain Description: DUF3994 Location: 3414-3723 bp Feature: domain Description: DUF3994 Location: 3414-372 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4352 (pfam11611), DUF5105 (pfam17118), DUF3994 (pfam13159), DDE_Tnp_1 (pfam01609), RVT-GII

Seq: NUSG01000062.1 Bacillus pseudomycoides strain AFS045932 AFS045932_104_G1_Contig62_140523, whole genome shotgun sequence (1970 bp)
Overview 1 RT 1: 145-1805 bp Neighborhood of RT #1 [145, 1805] RVT-GII GIIM Feature: gene Location: 145-1452 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 430-1069 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43 0-1069 bp Feature: domain Description: GIIM Note: maturase Location: 1144-1369 bp Feature: domain Description: GIIM Note: maturase Location: 1144-13 69 bp Feature: gene Location: 1626-1805 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: NUSG01000085.1 Bacillus pseudomycoides strain AFS045932 AFS045932_104_G1_Contig85_140523, whole genome shotgun sequence (38491 bp)
Overview 1 RT 1: 9777-14088 bp 2 RT 2: 24484-30142 bp Neighborhood of RT #1 [9777, 14195] Rve PRK03103 RVT-GII Intron_maturas2 HNHc PolY_Pol_V_umuC T4SS-DNA_transf Neighborhood of RT #2 [24484, 30142] DUF1738 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 9777-10484 bp Feature: domain Description: Rve Location: 9801-10413 bp Feature: domain Description: Rve Location: 9801-104 13 bp Feature: gene Location: 10617-10877 bp Feature: domain Description: PRK03103 Location: 10632-10866 bp Feature: domain Description: PRK03103 Location: 10632-10866 bp Feature: gene Location: 11140-12951 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11404-12235 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 114 04 -12235 bp Feature: domain Description: Intron_maturas2 Location: 12316-12649 bp Feature: domain Description: Intron_maturas2 Location: 12316-1264 9 bp Feature: domain Description: HNHc Note: nucleases Location: 12745-12922 bp Feature: domain Description: HNHc Note: nucleases Location: 1274 5-12922 bp Feature: gene Location: 13618-13872 bp Feature: domain Description: PolY_Pol_V_umuC Location: 13621-13867 bp Feature: domain Description: PolY_Pol_V_umuC Location: 13621-13867 bp Feature: gene Location: 13884-14195 bp Feature: domain Description: T4SS-DNA_transf Location: 13911-14088 bp Feature: domain Description: T4 SS-DNA_transf Location: 13911-14 088 bp Feature: gene Location: 24484-24765 bp Feature: gene Location: 24827-25204 bp Feature: domain Description: DUF1738 Location: 24971-25124 bp Feature: domain Description: DUF1738 Location: 24 971-25124 bp Feature: gene Location: 25916-27769 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26180-27020 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26180-27020 bp Feature: domain Description: Intron_maturas2 Location: 27110-27458 bp Feature: domain Description: Intron_maturas2 Location: 27110-274 58 bp Feature: domain Description: HNHc Note: nucleases Location: 27551-27716 bp Feature: domain Description: HNHc Note: nucleases Location: 27551-27716 bp Feature: gene Location: 27795-29129 bp Feature: gene Location: 29159-30142 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK03103 (DNA polymerase IV; Reviewed), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PolY_Pol_V_umuC (cd01700), T4SS-DNA_transf (pfam02534), Rve (COG3316), DUF1738 (pfam08401)