myRT

myRT report for GCA_002581285.1_ASM258128v1

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Seq: NURT01000103.1 Bacillus pseudomycoides strain AFS050088 AFS050088_96_D6_Contig103_140514, whole genome shotgun sequence (14079 bp)
Overview 1 RT 1: 10032-14030 bp Neighborhood of RT #1 [10032, 14077] T4SS-DNA_transf PolY_Pol_V_umuC RVT-GII Intron_maturas2 HNHc PRK03103 Rve Feature: gene Location: 10032-10343 bp Feature: domain Description: T4SS-DNA_transf Location: 10059-10236 bp Feature: domain Description: T4SS-DNA_transf Location: 1 0059-1 0236 bp Feature: gene Location: 10355-10609 bp Feature: domain Description: PolY_Pol_V_umuC Location: 10358-10604 bp Feature: domain Description: PolY_Pol_V_umuC Location: 1 0358-1 0604 bp Feature: gene Location: 11276-13087 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11540-12371 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 540-1 2371 bp Feature: domain Description: Intron_maturas2 Location: 12452-12785 bp Feature: domain Description: Intron_maturas2 Location: 1 2452-1 2785 bp Feature: domain Description: HNHc Note: nucleases Location: 12881-13058 bp Feature: domain Description: HNHc Note: nucleases Location: 1 2881 -1 3058 bp Feature: gene Location: 13350-13610 bp Feature: domain Description: PRK03103 Location: 13365-13599 bp Feature: domain Description: PRK031 03 Location: 1 3365-1 3599 bp Feature: gene Location: 13727-14077 bp Feature: domain Description: Rve Location: 13730-14030 bp Feature: domain Description: Rve Location: 1 3730-1 4030 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT T4SS-DNA_transf (pfam02534), PolY_Pol_V_umuC (cd01700), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PRK03103 (DNA polymerase IV; Reviewed), Rve (COG3316)

Seq: NURT01000157.1 Bacillus pseudomycoides strain AFS050088 AFS050088_96_D6_Contig157_140514, whole genome shotgun sequence (3583 bp)
Overview 1 RT 1: 3-2902 bp Neighborhood of RT #1 [3, 2955] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 3-1076 bp Feature: gene Location: 1102-2955 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1366-2206 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1366-2 2 06 bp Feature: domain Description: Intron_maturas2 Location: 2296-2644 bp Feature: domain Description: Intron_maturas2 Location: 2 2 96-2 644 bp Feature: domain Description: HNHc Note: nucleases Location: 2737-2902 bp Feature: domain Description: HNHc Note: nucleases Location: 2 737-2 902 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: NURT01000043.1 Bacillus pseudomycoides strain AFS050088 AFS050088_96_D6_Contig43_140514, whole genome shotgun sequence (35643 bp)
Overview 1 RT 1: 5514-11425 bp Neighborhood of RT #1 [5514, 11634] MFS_YfcJ_like DDE_Tnp_1 RVT-GII DUF4352 DUF5105 DUF3994 Feature: gene Location: 5514-6644 bp Feature: domain Description: MFS_YfcJ_like Location: 5556-6624 bp Feature: domain Description: MFS_YfcJ_like Location: 5556-6624 bp Feature: gene Location: 6712-8172 bp Feature: domain Description: DDE_Tnp_1 Location: 7069-7867 bp Feature: domain Description: DDE_Tnp_1 Location: 7069-7867 bp Feature: gene Location: 8425-8922 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8629-8743 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8629-8743 bp Feature: gene Location: 9385-10440 bp Feature: domain Description: DUF4352 Location: 9499-9820 bp Feature: domain Description: DUF43 52 Location: 9499-9820 bp Feature: domain Description: DUF5105 Location: 9886-10435 bp Feature: domain Description: DUF5105 Location: 9886-1043 5 bp Feature: gene Location: 10672-11634 bp Feature: domain Description: DUF3994 Location: 11116-11425 bp Feature: domain Description: DUF3 994 Location: 11116-11425 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3994 (pfam13159), MFS_YfcJ_like (cd17489), DDE_Tnp_1 (pfam01609), RVT-GII, DUF4352 (pfam11611), DUF5105 (pfam17118)

Seq: NURT01000063.1 Bacillus pseudomycoides strain AFS050088 AFS050088_96_D6_Contig63_140514, whole genome shotgun sequence (8410 bp)
Overview 1 RT 1: 2-4208 bp Neighborhood of RT #1 [2, 4208] RVT_N RVT-GII GIIM Feature: gene Location: 2-133 bp Feature: gene Location: 859-2544 bp Feature: RT Description: RVT_N Location: 943-1189 bp Feature: RT Description: RVT_N Location: 94 3-1189 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1243-1903 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 124 3-1903 bp Feature: domain Description: GIIM Note: maturase Location: 1969-2203 bp Feature: domain Description: GIIM Note: maturase Location: 1969-2203 bp Feature: gene Location: 2765-3220 bp Feature: gene Location: 3237-4208 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: NURT01000082.1 Bacillus pseudomycoides strain AFS050088 AFS050088_96_D6_Contig82_140514, whole genome shotgun sequence (7185 bp)
Overview 1 RT 1: 949-4371 bp Neighborhood of RT #1 [949, 4373] RVT-GII GIIM DDE_Tnp_1 Feature: gene Location: 949-1155 bp Feature: gene Location: 1597-1914 bp Feature: gene Location: 2127-3434 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2412-3051 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2412-305 1 bp Feature: domain Description: GIIM Note: maturase Location: 3126-3351 bp Feature: domain Description: GIIM Note: maturase Location: 3126-335 1 bp Feature: gene Location: 3608-3787 bp Feature: gene Location: 3960-4373 bp Feature: domain Description: DDE_Tnp_1 Location: 3969-4371 bp Feature: domain Description: DDE_Tnp_1 Location: 3969-4371 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DDE_Tnp_1 (pfam01609)