myRT

myRT report for GCA_002581675.1_ASM258167v1

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Seq: NUSL01000102.1 Bacillus toyonensis strain AFS045425 AFS045425_102_A6_Contig102_140514, whole genome shotgun sequence (25717 bp)
Overview 1 RT 1: 741-6269 bp Neighborhood of RT #1 [741, 6269] VirD4 RVT-GII HNHc TraG_VirD4 TraG_VirD4 Feature: gene Location: 741-1337 bp Feature: domain Description: VirD4 Location: 822-1323 bp Feature: domain Description: VirD4 Location: 822-1 323 bp Feature: gene Location: 1538-1771 bp Feature: gene Location: 2059-3888 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2359-3061 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2359-3061 bp Feature: domain Description: HNHc Note: nucleases Location: 3640-3772 bp Feature: domain Description: HNHc Note: nucleases Location: 3640-3772 bp Feature: gene Location: 4059-6002 bp Feature: domain Description: TraG_VirD4 Location: 4164-4602 bp Feature: domain Description: TraG_VirD4 Location: 41 64-4602 bp Feature: domain Description: TraG_VirD4 Location: 4632-5343 bp Feature: domain Description: TraG_VirD4 Location: 4632-5343 bp Feature: gene Location: 6060-6269 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT VirD4 (COG3505), RVT-GII, HNHc (smart00507), TraG_VirD4

Seq: NUSL01000037.1 Bacillus toyonensis strain AFS045425 AFS045425_102_A6_Contig37_140514, whole genome shotgun sequence (37903 bp)
Overview 1 RT 1: 32559-37222 bp Neighborhood of RT #1 [32559, 37239] bPH_3 PRK00024 RVT-GII HNHc RadC Feature: gene Location: 32559-33008 bp Feature: domain Description: bPH_3 Location: 32700-32991 bp Feature: domain Description: bPH_3 Location: 32 700-32 991 bp Feature: gene Location: 33955-34137 bp Feature: domain Description: PRK00024 Location: 33994-34132 bp Feature: domain Description: PRK0002 4 Location: 33994-34132 bp Feature: gene Location: 34248-36131 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34545-35286 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34545-352 86 bp Feature: domain Description: HNHc Note: nucleases Location: 35850-36018 bp Feature: domain Description: HNHc Note: nucleases Location: 35850-36018 bp Feature: gene Location: 36350-36529 bp Feature: gene Location: 36874-37239 bp Feature: domain Description: RadC Location: 36904-37222 bp Feature: domain Description: RadC Location: 36904-372 2 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT bPH_3 (pfam14470), PRK00024 (DNA repair protein RadC), RVT-GII, HNHc (smart00507), RadC (pfam04002)

Seq: NUSL01000054.1 Bacillus toyonensis strain AFS045425 AFS045425_102_A6_Contig54_140514, whole genome shotgun sequence (46368 bp)
Overview 1 RT 1: 17667-21318 bp Neighborhood of RT #1 [17667, 21341] Lactate_perm RVT-GII PRK10420 DUF4870 Feature: gene Location: 17667-17795 bp Feature: domain Description: Lactate_perm Location: 17679-17757 bp Feature: domain Description: Lactate_perm Location: 17679-17757 bp Feature: gene Location: 17922-18224 bp Feature: gene Location: 18560-18880 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18620-18821 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18620-18821 bp Feature: gene Location: 19069-20727 bp Feature: domain Description: PRK10420 Location: 19072-20725 bp Feature: domain Description: PRK10420 Location: 19072-20725 bp Feature: gene Location: 21024-21341 bp Feature: domain Description: DUF4870 Location: 21042-21318 bp Feature: domain Description: DUF4870 Location: 21042-213 18 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Lactate_perm (pfam02652), RVT-GII, PRK10420 (L-lactate permease; Provisional), DUF4870 (pfam09685)

Seq: NUSL01000056.1 Bacillus toyonensis strain AFS045425 AFS045425_102_A6_Contig56_140514, whole genome shotgun sequence (63456 bp)
Overview 1 RT 1: 8162-11925 bp Neighborhood of RT #1 [8162, 11925] Rve RVT-UG2 Feature: gene Location: 8162-8608 bp Feature: domain Description: Rve Location: 8186-8603 bp Feature: domain Description: Rve Location: 8186-8603 bp Feature: gene Location: 9222-9512 bp Feature: gene Location: 9781-11145 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 9958-10780 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 9958-10780 bp Feature: gene Location: 11284-11436 bp Feature: gene Location: 11764-11925 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Rve (COG3316), RVT-UG2