myRT

myRT report for GCA_002582485.1_ASM258248v1

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Seq: NUTL01000113.1 Bacillus pseudomycoides strain AFS037265 AFS037265_102_B6_Contig113_140514, whole genome shotgun sequence (14685 bp)
Overview 1 RT 1: 7632-12355 bp Neighborhood of RT #1 [7632, 12355] AdaA OGG_N RVT_N RVT-GII GIIM RimL Feature: gene Location: 7632-8297 bp Feature: domain Description: AdaA Location: 7713-8256 bp Feature: domain Description: AdaA Location: 771 3-8256 bp Feature: gene Location: 8442-8870 bp Feature: domain Description: OGG_N Location: 8616-8847 bp Feature: domain Description: OGG_N Location: 861 6-8847 bp Feature: gene Location: 9121-10770 bp Feature: RT Description: RVT_N Location: 9169-9415 bp Feature: RT Description: RVT_N Location: 91 69-941 5 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9469-10129 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9469-1 01 29 bp Feature: domain Description: GIIM Note: maturase Location: 10195-10429 bp Feature: domain Description: GIIM Note: maturase Location: 1 01 95-1 0429 bp Feature: gene Location: 11404-11949 bp Feature: domain Description: RimL Location: 11419-11935 bp Feature: domain Description: RimL Location: 1 1 41 9-1 1 935 bp Feature: gene Location: 12179-12355 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RimL (COG1670), AdaA (COG2169), OGG_N (pfam07934), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: NUTL01000131.1 Bacillus pseudomycoides strain AFS037265 AFS037265_102_B6_Contig131_140514, whole genome shotgun sequence (14147 bp)
Overview 1 RT 1: 8100-13557 bp Neighborhood of RT #1 [8100, 13557] T4SS-DNA_transf T4SS-DNA_transf RVT-GII HNHc Feature: gene Location: 8100-10112 bp Feature: domain Description: T4SS-DNA_transf Location: 8106-8646 bp Feature: domain Description: T4SS-DNA_transf Location: 8106-8646 bp Feature: domain Description: T4SS-DNA_transf Location: 8928-9438 bp Feature: domain Description: T4SS-DNA_transf Location: 892 8-9438 bp Feature: gene Location: 10124-10252 bp Feature: gene Location: 10254-12086 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10554-11259 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10554-112 59 bp Feature: domain Description: HNHc Note: nucleases Location: 11838-11970 bp Feature: domain Description: HNHc Note: nucleases Location: 11838-11970 bp Feature: gene Location: 12380-12613 bp Feature: gene Location: 12814-13557 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507), T4SS-DNA_transf (pfam02534)

Seq: NUTL01000208.1 Bacillus pseudomycoides strain AFS037265 AFS037265_102_B6_Contig208_140514, whole genome shotgun sequence (2831 bp)
Overview 1 RT 1: 3-2816 bp Neighborhood of RT #1 [3, 2830] RVT-GII GIIM DDE_Tnp_1 Feature: gene Location: 3-212 bp Feature: gene Location: 479-1786 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 764-1403 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 764-1403 bp Feature: domain Description: GIIM Note: maturase Location: 1478-1703 bp Feature: domain Description: GIIM Note: maturase Location: 1478-1703 bp Feature: gene Location: 1960-2139 bp Feature: gene Location: 2291-2830 bp Feature: domain Description: DDE_Tnp_1 Location: 2294-2816 bp Feature: domain Description: DDE_Tnp_1 Location: 2294-2816 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1 (pfam01609), RVT-GII, GIIM (pfam08388)

Seq: NUTL01000027.1 Bacillus pseudomycoides strain AFS037265 AFS037265_102_B6_Contig27_140514, whole genome shotgun sequence (26477 bp)
Overview 1 RT 1: 10774-16874 bp Neighborhood of RT #1 [10774, 16894] DUF3994 DUF4352 DUF5105 RVT-GII DDE_Tnp_1 MFS_YfcJ_like Feature: gene Location: 10774-11736 bp Feature: domain Description: DUF3994 Location: 11218-11527 bp Feature: domain Description: DUF3994 Location: 11218-11527 bp Feature: gene Location: 11968-13023 bp Feature: domain Description: DUF4352 Location: 12082-12403 bp Feature: domain Description: DUF4 352 Location: 12082-124 03 bp Feature: domain Description: DUF5105 Location: 12469-13018 bp Feature: domain Description: DUF5105 Location: 124 69-13018 bp Feature: gene Location: 13486-13983 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13690-13804 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13690-13804 bp Feature: gene Location: 14236-15696 bp Feature: domain Description: DDE_Tnp_1 Location: 14593-15391 bp Feature: domain Description: DDE_Tnp_1 Location: 14 593-15391 bp Feature: gene Location: 15764-16894 bp Feature: domain Description: MFS_YfcJ_like Location: 15806-16874 bp Feature: domain Description: MFS_YfcJ_like Location: 15806-16874 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3994 (pfam13159), DUF4352 (pfam11611), DUF5105 (pfam17118), RVT-GII, DDE_Tnp_1 (pfam01609), MFS_YfcJ_like (cd17489)

Seq: NUTL01000066.1 Bacillus pseudomycoides strain AFS037265 AFS037265_102_B6_Contig66_140514, whole genome shotgun sequence (18772 bp)
Overview 1 RT 1: 12548-17173 bp Neighborhood of RT #1 [12548, 17173] TraC-F-type Lysozyme_like RVT-GII HNHc Lysozyme_like Spr Feature: gene Location: 12548-13033 bp Feature: domain Description: TraC-F-type Location: 12617-12923 bp Feature: domain Description: TraC-F-type Location: 12617-12923 bp Feature: gene Location: 13037-13537 bp Feature: domain Description: Lysozyme_like Location: 13223-13520 bp Feature: domain Description: Lysozyme_like Location: 13223-135 20 bp Feature: gene Location: 14308-16089 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14566-15271 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 145 66-15 271 bp Feature: domain Description: HNHc Note: nucleases Location: 15835-15967 bp Feature: domain Description: HNHc Note: nucleases Location: 15 835 -15 967 bp Feature: gene Location: 16102-16836 bp Feature: domain Description: Lysozyme_like Location: 16201-16390 bp Feature: domain Description: Lysozyme_like Location: 16201-16390 bp Feature: domain Description: Spr Location: 16429-16819 bp Feature: domain Description: Spr Location: 16429-16819 bp Feature: gene Location: 16871-17173 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraC-F-type (TIGR02746), Lysozyme_like (pfam13702), RVT-GII, HNHc (smart00507), Spr (COG0791)