myRT

myRT report for GCA_002582575.1_ASM258257v1

Download annotations/find similar RTs

Seq: NUNG01000012.1 Bacillus thuringiensis strain AFS036437 AFS036437_71_B7_Contig12_140411, whole genome shotgun sequence (67414 bp)
Overview 1 RT 1: 38659-45509 bp Neighborhood of RT #1 [38659, 45509] RVT_N RVT-GII GIIM HNHc DEXDc Feature: gene Location: 38659-39372 bp Feature: gene Location: 39389-40096 bp Feature: gene Location: 40213-42021 bp Feature: RT Description: RVT_N Location: 40264-40504 bp Feature: RT Description: RVT_N Location: 40264-40504 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 40564-41218 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 40564-41 21 8 bp Feature: domain Description: GIIM Note: maturase Location: 41281-41515 bp Feature: domain Description: GIIM Note: maturase Location: 41 281 -41 51 5 bp Feature: domain Description: HNHc Note: nucleases Location: 41728-41875 bp Feature: domain Description: HNHc Note: nucleases Location: 41 728-41 875 bp Feature: gene Location: 42625-45258 bp Feature: domain Description: DEXDc Location: 43453-44404 bp Feature: domain Description: DEXDc Location: 43453-44404 bp Feature: gene Location: 45282-45509 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DEXDc (smart00487)

Seq: NUNG01000029.1 Bacillus thuringiensis strain AFS036437 AFS036437_71_B7_Contig29_140411, whole genome shotgun sequence (98310 bp)
Overview 1 RT 1: 47851-53358 bp Neighborhood of RT #1 [47851, 53432] DDE_Tnp_1 RVT-GII RVT-GII PRK06760 SalY Feature: gene Location: 47851-48294 bp Feature: gene Location: 48254-48745 bp Feature: domain Description: DDE_Tnp_1 Location: 48278-48524 bp Feature: domain Description: DDE_Tnp_1 Location: 482 78-4852 4 bp Feature: gene Location: 49139-49651 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49187-49280 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49187-492 80 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49352-49550 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49352 -49550 bp Feature: gene Location: 50745-51440 bp Feature: domain Description: PRK06760 Location: 50748-51420 bp Feature: domain Description: PRK06760 Location: 50748-5142 0 bp Feature: gene Location: 51468-53432 bp Feature: domain Description: SalY Location: 51651-53358 bp Feature: domain Description: SalY Location: 51651-53358 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1 (pfam01609), RVT-GII, PRK06760 (hypothetical protein; Provisional), SalY (COG0577)

Seq: NUNG01000033.1 Bacillus thuringiensis strain AFS036437 AFS036437_71_B7_Contig33_140411, whole genome shotgun sequence (79487 bp)
Overview 1 RT 1: 33391-39747 bp Neighborhood of RT #1 [33391, 39747] COG3183 RVT-Retrons Feature: gene Location: 33391-34557 bp Feature: domain Description: COG3183 Location: 34198-34537 bp Feature: domain Description: COG3 183 Location: 3 4198-3 453 7 bp Feature: gene Location: 35064-35336 bp Feature: gene Location: 36650-37606 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 36689-37292 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3 6689-3 7292 bp Feature: gene Location: 37607-38782 bp Feature: gene Location: 39049-39747 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3183 (Predicted restriction endonuclease, HNH family ), RVT-Retrons

Seq: NUNG01000059.1 Bacillus thuringiensis strain AFS036437 AFS036437_71_B7_Contig59_140411, whole genome shotgun sequence (34004 bp)
Overview 1 RT 1: 15993-23171 bp Neighborhood of RT #1 [15993, 23171] HTH_XRE DUF2207 TraG-D_C Ftsk_gamma RVT-GII Intron_maturas2 HNHc Feature: gene Location: 15993-16553 bp Feature: domain Description: HTH_XRE Location: 16005-16176 bp Feature: domain Description: HTH_XRE Location: 16005-16176 bp Feature: domain Description: DUF2207 Location: 16203-16398 bp Feature: domain Description: DUF2207 Location: 16203-16398 bp Feature: gene Location: 16806-18659 bp Feature: domain Description: TraG-D_C Location: 16947-17304 bp Feature: domain Description: TraG-D_C Location: 1694 7-17304 bp Feature: domain Description: Ftsk_gamma Location: 17712-17892 bp Feature: domain Description: Ftsk_gamma Location: 17712-17892 bp Feature: gene Location: 18763-20580 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19033-19855 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19033-19855 bp Feature: domain Description: Intron_maturas2 Location: 19936-20230 bp Feature: domain Description: Intron_maturas2 Location: 19936-20230 bp Feature: domain Description: HNHc Note: nucleases Location: 20377-20551 bp Feature: domain Description: HNHc Note: nucleases Location: 20377-20551 bp Feature: gene Location: 21172-22683 bp Feature: gene Location: 22701-23171 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), DUF2207 (pfam09972), TraG-D_C (pfam12696), Ftsk_gamma (smart00843), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: NUNG01000074.1 Bacillus thuringiensis strain AFS036437 AFS036437_71_B7_Contig74_140411, whole genome shotgun sequence (12025 bp)
Overview 1 RT 1: 2372-9964 bp Neighborhood of RT #1 [2372, 9964] rpsA TraG-D_C Ftsk_gamma Ftsk_gamma RVT-GII Intron_maturas2 HNHc Feature: gene Location: 2372-3355 bp Feature: domain Description: rpsA Location: 2639-3176 bp Feature: domain Description: rpsA Location: 2639-3176 bp Feature: gene Location: 3590-5449 bp Feature: domain Description: TraG-D_C Location: 3641-4001 bp Feature: domain Description: TraG-D_C Location: 3641-4001 bp Feature: domain Description: Ftsk_gamma Location: 4427-4607 bp Feature: domain Description: Ftsk_gamma Location: 4427-4607 bp Feature: domain Description: Ftsk_gamma Location: 4772-4913 bp Feature: domain Description: Ftsk_gamma Location: 4772-4913 bp Feature: gene Location: 5643-7352 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5805-6630 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5 805 -6630 bp Feature: domain Description: Intron_maturas2 Location: 6711-7002 bp Feature: domain Description: Intron_maturas2 Location: 6711-7002 bp Feature: domain Description: HNHc Note: nucleases Location: 7149-7326 bp Feature: domain Description: HNHc Note: nucleases Location: 7149-7326 bp Feature: gene Location: 8046-9557 bp Feature: gene Location: 9575-9964 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rpsA (TIGR00717), TraG-D_C (pfam12696), Ftsk_gamma (smart00843), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)