myRT

myRT report for GCA_002585805.1_ASM258580v1

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Seq: NUOQ01000007.1 Bacillus megaterium strain AFS032248 AFS032248_82_D2_Contig12_140604, whole genome shotgun sequence (17497 bp)
Overview 1 RT 1: 197-4006 bp Neighborhood of RT #1 [197, 4006] HxlR MdaB RVT_N RVT-GII GIIM Feature: gene Location: 197-565 bp Feature: domain Description: HxlR Location: 251-542 bp Feature: domain Description: HxlR Location: 251 -542 bp Feature: gene Location: 638-1165 bp Feature: domain Description: MdaB Location: 641-1157 bp Feature: domain Description: MdaB Location: 641 -1 1 57 bp Feature: gene Location: 1987-3672 bp Feature: RT Description: RVT_N Location: 2071-2317 bp Feature: RT Description: RVT_N Location: 2071 -231 7 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2371-3031 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2371 -3031 bp Feature: domain Description: GIIM Note: maturase Location: 3097-3331 bp Feature: domain Description: GIIM Note: maturase Location: 3097-3331 bp Feature: gene Location: 3704-3853 bp Feature: gene Location: 3869-4006 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HxlR (pfam01638), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), MdaB (COG2249)

Seq: NUOQ01000048.1 Bacillus megaterium strain AFS032248 AFS032248_82_D2_Contig23_140604, whole genome shotgun sequence (115634 bp)
Overview 1 RT 1: 30733-39012 bp Neighborhood of RT #1 [30733, 39056] COG4637 COG4637 RVT-Retrons DedA HK_WalK HK_WalK Feature: gene Location: 30733-32937 bp Feature: gene Location: 33032-35023 bp Feature: domain Description: COG4637 Location: 33035-33176 bp Feature: domain Description: COG4637 Location: 33035-33176 bp Feature: domain Description: COG4637 Location: 33767-33989 bp Feature: domain Description: COG4637 Location: 33767-33989 bp Feature: gene Location: 35253-36257 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 35370-35928 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 35370-3592 8 bp Feature: gene Location: 37013-37567 bp Feature: domain Description: DedA Location: 37040-37559 bp Feature: domain Description: DedA Location: 37040-37559 bp Feature: gene Location: 37557-39056 bp Feature: domain Description: HK_WalK Location: 37608-38319 bp Feature: domain Description: HK_WalK Location: 37608-38319 bp Feature: domain Description: HK_WalK Location: 38331-39012 bp Feature: domain Description: HK_WalK Location: 38331-39012 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4637 (Predicted ATPase ), RVT-Retrons, DedA (COG0586), HK_WalK (NF033092)

Seq: NUOQ01000052.1 Bacillus megaterium strain AFS032248 AFS032248_82_D2_Contig27_140604, whole genome shotgun sequence (111523 bp)
Overview 1 RT 1: 24497-28221 bp Neighborhood of RT #1 [24497, 28238] YdeN RVT-GII GIIM DUF3231 DUF3231 Feature: gene Location: 24497-25063 bp Feature: domain Description: YdeN Location: 24506-25055 bp Feature: domain Description: YdeN Location: 24506-25055 bp Feature: gene Location: 25243-25497 bp Feature: gene Location: 25705-26523 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25711-26347 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25711-263 47 bp Feature: domain Description: GIIM Note: maturase Location: 26413-26521 bp Feature: domain Description: GIIM Note: maturase Location: 26413 -26521 bp Feature: gene Location: 26557-26988 bp Feature: gene Location: 27234-28238 bp Feature: domain Description: DUF3231 Location: 27249-27705 bp Feature: domain Description: DUF3 23 1 Location: 27249-27705 bp Feature: domain Description: DUF3231 Location: 27741-28221 bp Feature: domain Description: DUF3 23 1 Location: 27741-28221 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YdeN (COG3545), RVT-GII, GIIM (pfam08388), DUF3231 (pfam11553)

Seq: NUOQ01000027.1 Bacillus megaterium strain AFS032248 AFS032248_82_D2_Contig53_140604, whole genome shotgun sequence (2428 bp)
Overview 1 RT 1: 110-1979 bp Neighborhood of RT #1 [110, 1979] RVT_N RVT-GII GIIM Feature: gene Location: 110-1759 bp Feature: RT Description: RVT_N Location: 158-404 bp Feature: RT Description: RVT_N Location: 158-4 04 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 458-1118 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 58-1118 bp Feature: domain Description: GIIM Note: maturase Location: 1187-1418 bp Feature: domain Description: GIIM Note: maturase Location: 1187-14 18 bp Feature: gene Location: 1779-1979 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)