myRT

myRT report for GCA_002588695.1_ASM258869v1

Download annotations/find similar RTs

Seq: NUTW01000014.1 Bacillus toyonensis strain AFS034699 AFS034699_120_E3_Contig14_140618, whole genome shotgun sequence (78721 bp)
Overview 1 RT 1: 5301-18303 bp Neighborhood of RT #1 [5301, 18303] TcpE VirB4_CagE AAA_10 RVT-GII Intron_maturas2 HNHc CwlT_like RVT-GII HNHc CwlT_like Spr Feature: gene Location: 5301-5705 bp Feature: domain Description: TcpE Location: 5337-5613 bp Feature: domain Description: TcpE Location: 5337-561 3 bp Feature: gene Location: 5765-8158 bp Feature: domain Description: VirB4_CagE Location: 5792-6896 bp Feature: domain Description: VirB4_CagE Location: 5792-6896 bp Feature: domain Description: AAA_10 Location: 7106-8132 bp Feature: domain Description: AAA_1 0 Location: 71 06-81 32 bp Feature: gene Location: 8725-10533 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8989-9814 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8989-981 4 bp Feature: domain Description: Intron_maturas2 Location: 9913-10204 bp Feature: domain Description: Intron_maturas2 Location: 991 3-1 0204 bp Feature: domain Description: HNHc Note: nucleases Location: 10360-10507 bp Feature: domain Description: HNHc Note: nucleases Location: 1 0360-1 0507 bp Feature: gene Location: 10664-10816 bp Feature: gene Location: 10818-11300 bp Feature: gene Location: 11332-13710 bp Feature: gene Location: 13738-14376 bp Feature: domain Description: CwlT_like Location: 14113-14359 bp Feature: domain Description: CwlT_like Location: 1 41 1 3-1 4359 bp Feature: gene Location: 15220-16929 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15406-16111 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 5406-1 61 1 1 bp Feature: domain Description: HNHc Note: nucleases Location: 16675-16807 bp Feature: domain Description: HNHc Note: nucleases Location: 1 6675-1 6807 bp Feature: gene Location: 16942-17655 bp Feature: domain Description: CwlT_like Location: 17041-17230 bp Feature: domain Description: CwlT_like Location: 1 7041 -1 7230 bp Feature: domain Description: Spr Location: 17266-17638 bp Feature: domain Description: Spr Location: 1 7266-1 7638 bp Feature: gene Location: 17707-18303 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TcpE (pfam12648), VirB4_CagE (TIGR00929), AAA_10 (pfam12846), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), CwlT_like, Spr (COG0791)

Seq: NUTW01000024.1 Bacillus toyonensis strain AFS034699 AFS034699_120_E3_Contig24_140618, whole genome shotgun sequence (49318 bp)
Overview 1 RT 1: 36440-40307 bp Neighborhood of RT #1 [36440, 40309] DUF4870 PRK10420 RVT-GII PRK10420 Feature: gene Location: 36440-36757 bp Feature: domain Description: DUF4870 Location: 36458-36734 bp Feature: domain Description: DUF4870 Location: 36458-36734 bp Feature: gene Location: 37054-38712 bp Feature: domain Description: PRK10420 Location: 37057-38710 bp Feature: domain Description: PRK1042 0 Location: 37057-38710 bp Feature: gene Location: 38901-39221 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 38961-39162 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 38961-39162 bp Feature: gene Location: 39557-39859 bp Feature: gene Location: 39986-40309 bp Feature: domain Description: PRK10420 Location: 39998-40307 bp Feature: domain Description: PRK1042 0 Location: 39998-40307 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4870 (pfam09685), PRK10420 (L-lactate permease; Provisional), RVT-GII

Seq: NUTW01000029.1 Bacillus toyonensis strain AFS034699 AFS034699_120_E3_Contig29_140618, whole genome shotgun sequence (63962 bp)
Overview 1 RT 1: 35984-42699 bp Neighborhood of RT #1 [35984, 42699] AAA_15 TOPRIM_OLD DUF3854 RVT-GII GIIM Feature: gene Location: 35984-37798 bp Feature: domain Description: AAA_15 Location: 35987-36992 bp Feature: domain Description: AAA_15 Location: 3 5987-3 6992 bp Feature: domain Description: TOPRIM_OLD Location: 37154-37436 bp Feature: domain Description: TOPRIM_OLD Location: 3 7154-3 743 6 bp Feature: gene Location: 38143-38505 bp Feature: domain Description: DUF3854 Location: 38236-38473 bp Feature: domain Description: DUF3 854 Location: 3 823 6-3 8473 bp Feature: gene Location: 38615-40492 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 38936-39635 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 893 6-3 963 5 bp Feature: domain Description: GIIM Note: maturase Location: 39719-39896 bp Feature: domain Description: GIIM Note: maturase Location: 3 9719-3 9896 bp Feature: gene Location: 41202-42215 bp Feature: gene Location: 42547-42699 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_15 (pfam13175), TOPRIM_OLD (cd01026), DUF3854 (pfam12965), RVT-GII, GIIM (pfam08388)