myRT

myRT report for GCA_002588885.1_ASM258888v1

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Seq: NUUJ01000011.1 Bacillus pseudomycoides strain AFS032210 AFS032210_73_E3_Contig11_140411, whole genome shotgun sequence (14926 bp)
Overview 1 RT 1: 9777-13991 bp Neighborhood of RT #1 [9777, 14098] Rve PRK03103 RVT-GII Intron_maturas2 HNHc PolY_Pol_V_umuC T4SS-DNA_transf Feature: gene Location: 9777-10457 bp Feature: domain Description: Rve Location: 9801-10416 bp Feature: domain Description: Rve Location: 9801 -1 041 6 bp Feature: gene Location: 10520-10780 bp Feature: domain Description: PRK03103 Location: 10535-10769 bp Feature: domain Description: PRK031 03 Location: 1 0535-1 0769 bp Feature: gene Location: 11043-12854 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11307-12138 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 307-1 21 38 bp Feature: domain Description: Intron_maturas2 Location: 12219-12552 bp Feature: domain Description: Intron_maturas2 Location: 1 221 9-1 2552 bp Feature: domain Description: HNHc Note: nucleases Location: 12648-12825 bp Feature: domain Description: HNHc Note: nucleases Location: 1 2648-1 2825 bp Feature: gene Location: 13521-13775 bp Feature: domain Description: PolY_Pol_V_umuC Location: 13524-13770 bp Feature: domain Description: PolY_Pol_V_umuC Location: 1 3524-1 3770 bp Feature: gene Location: 13787-14098 bp Feature: domain Description: T4SS-DNA_transf Location: 13814-13991 bp Feature: domain Description: T4SS-DNA_transf Location: 1 381 4-1 3991 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK03103 (DNA polymerase IV; Reviewed), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PolY_Pol_V_umuC (cd01700), T4SS-DNA_transf (pfam02534), Rve (COG3316)

Seq: NUUJ01000185.1 Bacillus pseudomycoides strain AFS032210 AFS032210_73_E3_Contig185_140411, whole genome shotgun sequence (27861 bp)
Overview 1 RT 1: 23966-27554 bp Neighborhood of RT #1 [23966, 27859] DUF3994 DUF4352 DUF5105 RVT-GII DDE_Tnp_1 Feature: gene Location: 23966-24928 bp Feature: domain Description: DUF3994 Location: 24410-24719 bp Feature: domain Description: DUF3994 Location: 2 4410-2 4719 bp Feature: gene Location: 25160-26215 bp Feature: domain Description: DUF4352 Location: 25274-25595 bp Feature: domain Description: DUF4352 Location: 2 52 74-2 5595 bp Feature: domain Description: DUF5105 Location: 25661-26210 bp Feature: domain Description: DUF5105 Location: 2 5661-2 62 10 bp Feature: gene Location: 26678-27175 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26882-26996 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 6882 -2 6996 bp Feature: gene Location: 27428-27859 bp Feature: domain Description: DDE_Tnp_1 Location: 27452-27554 bp Feature: domain Description: DDE_Tnp_1 Location: 2 7452 -2 7554 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3994 (pfam13159), DUF4352 (pfam11611), DUF5105 (pfam17118), RVT-GII, DDE_Tnp_1 (pfam01609)

Seq: NUUJ01000042.1 Bacillus pseudomycoides strain AFS032210 AFS032210_73_E3_Contig42_140411, whole genome shotgun sequence (1972 bp)
Overview 1 RT 1: 146-1806 bp Neighborhood of RT #1 [146, 1806] RVT-GII GIIM Feature: gene Location: 146-1453 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 431-1070 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43 1-1070 bp Feature: domain Description: GIIM Note: maturase Location: 1145-1370 bp Feature: domain Description: GIIM Note: maturase Location: 1145-13 70 bp Feature: gene Location: 1627-1806 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)