myRT

myRT report for GCA_002591785.1_ASM259178v1

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Seq: PDDX01000001.1 Budvicia aquatica strain FDAARGOS_387 pRIID_90.contig.0, whole genome shotgun sequence (5946490 bp)
Overview 1 RT 1: 517775-523691 bp 2 RT 2: 550538-554682 bp 3 RT 3: 1495973-1500055 bp 4 RT 4: 1531727-1535290 bp 5 RT 5: 2317376-2323464 bp 6 RT 6: 2976709-2981145 bp 7 RT 7: 3843968-3848146 bp 8 RT 8: 3982187-3986112 bp 9 RT 9: 3995236-3999578 bp 10 RT 10: 4638790-4642635 bp 11 RT 11: 4688881-4692702 bp 12 RT 12: 4937840-4941469 bp 13 RT 13: 5256328-5260429 bp Neighborhood of RT #1 [517775, 523738] M20_Acy1_YhaA-like PRK15023 RVT-GII GIIM LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 Neighborhood of RT #2 [550538, 554682] Avd_like RVT-DGRs Neighborhood of RT #3 [1495973, 1500055] RVT-UG4 Neighborhood of RT #4 [1531727, 1535316] RVT-UG4 InsA Neighborhood of RT #5 [2317376, 2323466] dgt PRK11477 RVT-Retrons galactar-dH20 Neighborhood of RT #6 [2976709, 2981174] RVT-UG4 InsA Neighborhood of RT #7 [3843968, 3848146] RVT-UG4 Neighborhood of RT #8 [3982187, 3986112] RVT-UG4 Neighborhood of RT #9 [3995236, 3999757] YeeP RVT_N RVT-GII GIIM HNHc DUF4234 DUF4234 Neighborhood of RT #10 [4638790, 4642635] WzzB InsA RVT-UG4 Neighborhood of RT #11 [4688881, 4692702] RVT_N RVT-GII GIIM HNHc LomR Neighborhood of RT #12 [4937840, 4941469] YeeP RVT-GII GIIM HNHc RVT_N Neighborhood of RT #13 [5256328, 5260458] RVT-UG4 RVT-UG4 InsA Feature: gene Location: 517775-518953 bp Feature: domain Description: M20_Acy1_YhaA-like Location: 517793-518939 bp Feature: domain Description: M20_Acy1 _YhaA-like Location: 51 7793-51 8939 bp Feature: gene Location: 519106-520473 bp Feature: domain Description: PRK15023 Location: 519109-520462 bp Feature: domain Description: PRK1 5023 Location: 51 91 09-520462 bp Feature: gene Location: 520621-521850 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 520822-521476 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 520822-521 476 bp Feature: domain Description: GIIM Note: maturase Location: 521554-521776 bp Feature: domain Description: GIIM Note: maturase Location: 521 554-521 776 bp Feature: gene Location: 521845-522471 bp Feature: gene Location: 522473-523738 bp Feature: domain Description: LZ_Tnp_IS66 Location: 522614-522833 bp Feature: domain Description: LZ_Tnp_IS66 Location: 52261 4-522833 bp Feature: domain Description: zf-IS66 Location: 522857-522983 bp Feature: domain Description: zf-IS66 Location: 522857-522983 bp Feature: domain Description: DDE_Tnp_IS66 Location: 523028-523691 bp Feature: domain Description: DDE_Tnp_IS66 Location: 523028-523691 bp Feature: gene Location: 550538-550861 bp Feature: gene Location: 550911-551312 bp Feature: domain Description: Avd_like Location: 550941-551271 bp Feature: domain Description: Avd_like Location: 550941 -551 271 bp Feature: gene Location: 551311-552567 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 551494-552196 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 551 494-5521 96 bp Feature: gene Location: 552912-553379 bp Feature: gene Location: 553519-554682 bp Feature: gene Location: 1495973-1496149 bp Feature: gene Location: 1496282-1496584 bp Feature: gene Location: 1496777-1497568 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 1497131-1497329 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 1 4971 31 -1 497329 bp Feature: gene Location: 1497797-1498987 bp Feature: gene Location: 1499192-1500055 bp Feature: gene Location: 1531727-1532608 bp Feature: gene Location: 1532906-1534087 bp Feature: gene Location: 1534122-1534709 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 1534164-1534503 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 1 5341 64-1 534503 bp Feature: gene Location: 1534796-1534987 bp Feature: gene Location: 1535125-1535316 bp Feature: domain Description: InsA Location: 1535152-1535290 bp Feature: domain Description: InsA Location: 1 5351 52-1 535290 bp Feature: gene Location: 2317376-2318872 bp Feature: domain Description: dgt Location: 2317385-2318867 bp Feature: domain Description: dgt Location: 231 7385-231 8867 bp Feature: gene Location: 2319104-2320258 bp Feature: domain Description: PRK11477 Location: 2319107-2320256 bp Feature: domain Description: PRK1 1 477 Location: 231 91 07-2320256 bp Feature: gene Location: 2320553-2321551 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2320718-2321273 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 232071 8-2321 273 bp Feature: gene Location: 2321563-2321766 bp Feature: gene Location: 2321904-2323466 bp Feature: domain Description: galactar-dH20 Location: 2321937-2323464 bp Feature: domain Description: galactar-dH20 Location: 2321 937-2323464 bp Feature: gene Location: 2976709-2977593 bp Feature: gene Location: 2977798-2979045 bp Feature: gene Location: 2979062-2980084 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 2979416-2979857 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 297941 6-2979857 bp Feature: gene Location: 2980266-2980568 bp Feature: gene Location: 2980977-2981174 bp Feature: domain Description: InsA Location: 2980995-2981145 bp Feature: domain Description: InsA Location: 2980995-2981 1 45 bp Feature: gene Location: 3843968-3844144 bp Feature: gene Location: 3844261-3844590 bp Feature: gene Location: 3844770-3845771 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 3845124-3845565 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 38451 24-3845565 bp Feature: gene Location: 3845777-3847051 bp Feature: gene Location: 3847256-3848146 bp Feature: gene Location: 3982187-3982516 bp Feature: gene Location: 3982639-3982863 bp Feature: gene Location: 3982929-3983699 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 3983049-3983490 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 3983049-3983490 bp Feature: gene Location: 3983722-3985011 bp Feature: gene Location: 3985216-3986112 bp Feature: gene Location: 3995236-3995412 bp Feature: gene Location: 3995587-3996474 bp Feature: domain Description: YeeP Location: 3995611-3996472 bp Feature: domain Description: YeeP Location: 399561 1 -3996472 bp Feature: gene Location: 3996636-3998324 bp Feature: domain Description: RVT_N Location: 3996699-3996936 bp Feature: domain Description: RVT_N Location: 3996699-3996936 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3996987-3997629 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3996987-3997629 bp Feature: domain Description: GIIM Note: maturase Location: 3997680-3997914 bp Feature: domain Description: GIIM Note: maturase Location: 3997680-399791 4 bp Feature: domain Description: HNHc Note: nucleases Location: 3998145-3998286 bp Feature: domain Description: HNHc Note: nucleases Location: 39981 45-3998286 bp Feature: gene Location: 3998490-3998891 bp Feature: gene Location: 3999248-3999757 bp Feature: domain Description: DUF4234 Location: 3999287-3999371 bp Feature: domain Description: DUF4234 Location: 3999287-3999371 bp Feature: domain Description: DUF4234 Location: 3999506-3999578 bp Feature: domain Description: DUF4234 Location: 3999506-3999578 bp Feature: gene Location: 4638790-4639914 bp Feature: domain Description: WzzB Location: 4638874-4639909 bp Feature: domain Description: WzzB Location: 4638874-4639909 bp Feature: gene Location: 4640042-4640449 bp Feature: domain Description: InsA Location: 4640273-4640420 bp Feature: domain Description: InsA Location: 4640273-4640420 bp Feature: gene Location: 4640741-4641187 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 4640744-4640945 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 4640744-4640945 bp Feature: gene Location: 4641214-4642383 bp Feature: gene Location: 4642387-4642635 bp Feature: gene Location: 4688881-4689030 bp Feature: gene Location: 4689084-4689485 bp Feature: gene Location: 4689651-4691339 bp Feature: domain Description: RVT_N Location: 4689714-4689951 bp Feature: domain Description: RVT_N Location: 468971 4-4689951 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4690002-4690644 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4690002-4690644 bp Feature: domain Description: GIIM Note: maturase Location: 4690695-4690929 bp Feature: domain Description: GIIM Note: maturase Location: 4690695-4690929 bp Feature: domain Description: HNHc Note: nucleases Location: 4691160-4691301 bp Feature: domain Description: HNHc Note: nucleases Location: 4691 1 60-4691 301 bp Feature: gene Location: 4691552-4692301 bp Feature: domain Description: LomR Location: 4691576-4692299 bp Feature: domain Description: LomR Location: 4691 576-4692299 bp Feature: gene Location: 4692472-4692702 bp Feature: gene Location: 4937840-4938034 bp Feature: gene Location: 4938167-4939054 bp Feature: domain Description: YeeP Location: 4938191-4939052 bp Feature: domain Description: YeeP Location: 49381 91 -4939052 bp Feature: gene Location: 4939216-4940511 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4939219-4939816 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 493921 9-493981 6 bp Feature: domain Description: GIIM Note: maturase Location: 4939867-4940101 bp Feature: domain Description: GIIM Note: maturase Location: 4939867-49401 01 bp Feature: domain Description: HNHc Note: nucleases Location: 4940332-4940473 bp Feature: domain Description: HNHc Note: nucleases Location: 4940332-4940473 bp Feature: gene Location: 4940598-4940903 bp Feature: domain Description: RVT_N Location: 4940661-4940847 bp Feature: domain Description: RVT_N Location: 4940661 -4940847 bp Feature: gene Location: 4941068-4941469 bp Feature: gene Location: 5256328-5257221 bp Feature: gene Location: 5257426-5258643 bp Feature: gene Location: 5258660-5259025 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 5258663-5258816 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 5258663-525881 6 bp Feature: gene Location: 5259040-5259663 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 5259394-5259574 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 5259394-5259574 bp Feature: gene Location: 5259832-5260158 bp Feature: gene Location: 5260276-5260458 bp Feature: domain Description: InsA Location: 5260291-5260429 bp Feature: domain Description: InsA Location: 5260291 -5260429 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT M20_Acy1_YhaA-like (cd08021), PRK15023 (L-serine deaminase; Provisional), RVT-GII, GIIM (pfam08388), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), Avd_like (cd16376), RVT-DGRs, RVT-UG4
InsA (COG3677), dgt (PRK04926), PRK11477 (CdaR family transcriptional regulator), RVT-Retrons, galactar-dH20 (TIGR03248), YeeP (COG3596), RVT_N (pfam13655), HNHc (smart00507), DUF4234 (pfam14018), WzzB (COG3765)
LomR (COG3637)