myRT

myRT report for GCA_002607855.1_ASM260785v1

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Seq: AWQQ01000024.1 Desulfotomaculum profundi strain Bs107 Contig_237, whole genome shotgun sequence (98139 bp)
Overview 1 RT 1: 28139-32115 bp 2 RT 2: 68387-71251 bp Neighborhood of RT #1 [28139, 32138] Lrp RVT-GII Intron_maturas2 ParAB_family BcsQ Neighborhood of RT #2 [68387, 71370] RVT-GII Zn_dep_PLPC GT4-like Feature: gene Location: 28139-28804 bp Feature: domain Description: Lrp Location: 28142-28448 bp Feature: domain Description: Lrp Location: 281 42-28448 bp Feature: gene Location: 29147-29500 bp Feature: gene Location: 29524-31257 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29860-30595 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29860-30595 bp Feature: domain Description: Intron_maturas2 Location: 30691-30982 bp Feature: domain Description: Intron_maturas2 Location: 30691 -30982 bp Feature: gene Location: 31363-31551 bp Feature: domain Description: ParAB_family Location: 31453-31546 bp Feature: domain Description: ParAB_family Location: 31 453-31 546 bp Feature: gene Location: 31620-32138 bp Feature: domain Description: BcsQ Location: 31629-32115 bp Feature: domain Description: BcsQ Location: 31 629-321 1 5 bp Feature: gene Location: 68387-68539 bp Feature: gene Location: 68684-68911 bp Feature: gene Location: 68917-69333 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 69172-69331 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 691 72-69331 bp Feature: gene Location: 70008-70697 bp Feature: domain Description: Zn_dep_PLPC Location: 70107-70689 bp Feature: domain Description: Zn_dep_PLPC Location: 701 07-70689 bp Feature: gene Location: 70723-71370 bp Feature: domain Description: GT4-like Location: 70729-71251 bp Feature: domain Description: GT4-like Location: 70729-71 251 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Lrp (COG1522), RVT-GII, Intron_maturas2 (pfam01348), ParAB_family (cd02042), BcsQ (COG1192), Zn_dep_PLPC (smart00770), GT4-like (cd05844)

Seq: AWQQ01000025.1 Desulfotomaculum profundi strain Bs107 Contig_239, whole genome shotgun sequence (9087 bp)
Overview 1 RT 1: 2576-7105 bp Neighborhood of RT #1 [2576, 7105] HTH_32 rve Mu-transpos_C ExeA RVT-GII Feature: gene Location: 2576-3823 bp Feature: domain Description: HTH_32 Location: 2741-2972 bp Feature: domain Description: HTH_32 Location: 2 741-2 972 bp Feature: domain Description: rve Location: 3044-3389 bp Feature: domain Description: rve Location: 3044-3389 bp Feature: domain Description: Mu-transpos_C Location: 3572-3716 bp Feature: domain Description: Mu-transpos_C Location: 3572 -3716 bp Feature: gene Location: 4017-4622 bp Feature: domain Description: ExeA Location: 4080-4596 bp Feature: domain Description: ExeA Location: 4080-4596 bp Feature: gene Location: 4776-5507 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4989-5481 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4989-5481 bp Feature: gene Location: 5586-6050 bp Feature: gene Location: 6287-7105 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_32 (pfam13565), rve (pfam00665), Mu-transpos_C (pfam09299), ExeA (COG3267), RVT-GII

Seq: AWQQ01000031.1 Desulfotomaculum profundi strain Bs107 Contig_257, whole genome shotgun sequence (10055 bp)
Overview 1 RT 1: 1439-4564 bp Neighborhood of RT #1 [1439, 4564] RVT-GII HNHc Feature: gene Location: 1439-1636 bp Feature: gene Location: 1678-1812 bp Feature: gene Location: 1831-3717 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2158-2863 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2158-2863 bp Feature: domain Description: HNHc Note: nucleases Location: 3454-3622 bp Feature: domain Description: HNHc Note: nucleases Location: 3 454-3 622 bp Feature: gene Location: 3867-4019 bp Feature: gene Location: 4358-4564 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507)

Seq: AWQQ01000047.1 Desulfotomaculum profundi strain Bs107 Contig_299, whole genome shotgun sequence (156883 bp)
Overview 1 RT 1: 16372-18643 bp Neighborhood of RT #1 [16372, 18643] COG4584 RVT-DGRs Feature: gene Location: 16372-16869 bp Feature: gene Location: 16911-17126 bp Feature: domain Description: COG4584 Location: 16923-17115 bp Feature: domain Description: COG4 584 Location: 16923-17115 bp Feature: gene Location: 17212-17841 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 17215-17584 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 17215-17584 bp Feature: gene Location: 17955-18389 bp Feature: gene Location: 18500-18643 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4584 (Transposase ), RVT-DGRs

Seq: AWQQ01000056.1 Desulfotomaculum profundi strain Bs107 Contig_318, whole genome shotgun sequence (25963 bp)
Overview 1 RT 1: 18671-22792 bp Neighborhood of RT #1 [18671, 23052] AgrB RVT-GII GIIM HTH_32 rve Feature: gene Location: 18671-19279 bp Feature: domain Description: AgrB Location: 18722-19250 bp Feature: domain Description: AgrB Location: 18722-1925 0 bp Feature: gene Location: 19579-19716 bp Feature: gene Location: 20293-21597 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20548-21241 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 205 48-21241 bp Feature: domain Description: GIIM Note: maturase Location: 21325-21526 bp Feature: domain Description: GIIM Note: maturase Location: 21325 -215 26 bp Feature: gene Location: 21678-21848 bp Feature: gene Location: 21997-23052 bp Feature: domain Description: HTH_32 Location: 22069-22297 bp Feature: domain Description: HTH_32 Location: 22069-22297 bp Feature: domain Description: rve Location: 22423-22792 bp Feature: domain Description: rve Location: 22423-22792 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AgrB (smart00793), RVT-GII, GIIM (pfam08388), HTH_32 (pfam13565), rve (pfam00665)

Seq: AWQQ01000060.1 Desulfotomaculum profundi strain Bs107 Contig_447, whole genome shotgun sequence (1056 bp)
Overview 1 RT 1: 477-984 bp Neighborhood of RT #1 [477, 1055] RVT-GII GIIM Feature: gene Location: 477-1055 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 486-699 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 486 -6 99 bp Feature: domain Description: GIIM Note: maturase Location: 783-984 bp Feature: domain Description: GIIM Note: maturase Location: 783-984 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: AWQQ01000095.1 Desulfotomaculum profundi strain Bs107 Contig_628, whole genome shotgun sequence (96470 bp)
Overview 1 RT 1: 9878-14278 bp Neighborhood of RT #1 [9878, 14406] RVT-GII GIIM KilA-N DUF4238 Feature: gene Location: 9878-10060 bp Feature: gene Location: 10664-10846 bp Feature: gene Location: 10999-11982 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11173-11794 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1117 3-117 94 bp Feature: domain Description: GIIM Note: maturase Location: 11836-11977 bp Feature: domain Description: GIIM Note: maturase Location: 11836-1197 7 bp Feature: gene Location: 12347-13258 bp Feature: domain Description: KilA-N Location: 12443-12839 bp Feature: domain Description: KilA-N Location: 12443-12839 bp Feature: gene Location: 13636-14406 bp Feature: domain Description: DUF4238 Location: 13663-14278 bp Feature: domain Description: DUF4238 Location: 13663-1427 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), KilA-N (pfam04383), DUF4238 (pfam14022)

Seq: AWQQ01000146.1 Desulfotomaculum profundi strain Bs107 Contig_855, whole genome shotgun sequence (73023 bp)
Overview 1 RT 1: 49860-53587 bp Neighborhood of RT #1 [49860, 53587] PemK_toxin RVT-GII HNH Feature: gene Location: 49860-50270 bp Feature: gene Location: 50358-50729 bp Feature: domain Description: PemK_toxin Location: 50397-50715 bp Feature: domain Description: PemK_toxin Location: 50397-50715 bp Feature: gene Location: 50840-52720 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51161-51869 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51161-518 69 bp Feature: domain Description: HNH Note: nucleases Location: 52496-52631 bp Feature: domain Description: HNH Note: nucleases Location: 52496-52631 bp Feature: gene Location: 53182-53367 bp Feature: gene Location: 53396-53587 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PemK_toxin (pfam02452), RVT-GII, HNH (pfam01844)