myRT

myRT report for GCA_002607925.1_ASM260792v1

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Seq: LAHJ01000015.1 Nostoc linckia z18 scaffold16.1, whole genome shotgun sequence (81481 bp)
Overview 1 RT 1: 10858-19562 bp Neighborhood of RT #1 [10858, 19654] Dcm RVT_N RVT-GII GIIM McrA bass IF2_N KOG1803 KOG1803 Feature: gene Location: 10858-11178 bp Feature: gene Location: 11223-11651 bp Feature: domain Description: Dcm Location: 11349-11625 bp Feature: domain Description: Dcm Location: 1 1 349-1 1 625 bp Feature: gene Location: 12382-13956 bp Feature: RT Description: RVT_N Location: 12418-12658 bp Feature: RT Description: RVT_N Location: 1 241 8-1 2658 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12715-13372 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 271 5-1 3372 bp Feature: domain Description: GIIM Note: maturase Location: 13429-13621 bp Feature: domain Description: GIIM Note: maturase Location: 1 3429-1 3621 bp Feature: domain Description: McrA Location: 13648-13933 bp Feature: domain Description: McrA Location: 1 3648-1 3933 bp Feature: gene Location: 14470-14931 bp Feature: domain Description: bass Location: 14479-14899 bp Feature: domain Description: bass Location: 1 4479-1 4899 bp Feature: gene Location: 15152-19654 bp Feature: domain Description: IF2_N Location: 15164-15311 bp Feature: domain Description: IF2_N Location: 1 51 64-1 531 1 bp Feature: domain Description: KOG1803 Location: 16247-16862 bp Feature: domain Description: KOG1 803 Location: 1 6247-1 6862 bp Feature: domain Description: KOG1803 Location: 18650-19562 bp Feature: domain Description: KOG1 803 Location: 1 8650-1 9562 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Dcm (COG0270), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058), bass (TIGR00841), IF2_N (pfam04760), KOG1803 (KOG1803, DNA helicase )

Seq: LAHJ01000149.1 Nostoc linckia z18 scaffold162.1, whole genome shotgun sequence (16707 bp)
Overview 1 RT 1: 4693-11062 bp Neighborhood of RT #1 [4693, 11139] TPR TPR Na_symport_lg RVT_N RVT-GII McrA S2P-M50_like_1 Feature: gene Location: 4693-5535 bp Feature: domain Description: TPR Location: 4870-5158 bp Feature: domain Description: TPR Location: 4870-5158 bp Feature: domain Description: TPR Location: 5218-5461 bp Feature: domain Description: TPR Location: 52 18-5461 bp Feature: gene Location: 5673-7328 bp Feature: domain Description: Na_symport_lg Location: 5697-7314 bp Feature: domain Description: Na_symport_lg Location: 5697-7314 bp Feature: gene Location: 7530-9110 bp Feature: RT Description: RVT_N Location: 7566-7806 bp Feature: RT Description: RVT_N Location: 7566-7806 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7863-8526 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7863-852 6 bp Feature: domain Description: McrA Location: 8760-9087 bp Feature: domain Description: McrA Location: 8760-9087 bp Feature: gene Location: 9564-9737 bp Feature: gene Location: 10519-11139 bp Feature: domain Description: S2P-M50_like_1 Location: 10567-11062 bp Feature: domain Description: S2 P-M50_like_1 Location: 10567-11062 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT S2P-M50_like_1 (cd06158), TPR (smart00028), Na_symport_lg (TIGR03648), RVT_N (pfam13655), RVT-GII, McrA (COG4058)

Seq: LAHJ01000030.1 Nostoc linckia z18 scaffold31.1, whole genome shotgun sequence (67376 bp)
Overview 1 RT 1: 60576-64903 bp Neighborhood of RT #1 [60576, 64959] RVT_N RVT-GII GIIM McrA ArdA Feature: gene Location: 60576-60791 bp Feature: gene Location: 60917-61627 bp Feature: gene Location: 61966-63363 bp Feature: RT Description: RVT_N Location: 62002-62242 bp Feature: RT Description: RVT_N Location: 62002-62242 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 62299-62962 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 62299-62962 bp Feature: domain Description: GIIM Note: maturase Location: 63019-63208 bp Feature: domain Description: GIIM Note: maturase Location: 63 019-63 208 bp Feature: domain Description: McrA Location: 63214-63340 bp Feature: domain Description: McrA Location: 63 214-63 3 40 bp Feature: gene Location: 63895-64113 bp Feature: gene Location: 64159-64959 bp Feature: domain Description: ArdA Location: 64408-64903 bp Feature: domain Description: ArdA Location: 64408-64903 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058), ArdA (pfam07275)

Seq: LAHJ01000032.1 Nostoc linckia z18 scaffold33.1, whole genome shotgun sequence (65038 bp)
Overview 1 RT 1: 29851-36296 bp Neighborhood of RT #1 [29851, 36296] met_A_Alw26 SPFH_eoslipins_u2 SPFH_eoslipins_u2 SPFH_eoslipins_u2 RVT-Retrons Feature: gene Location: 29851-31293 bp Feature: domain Description: met_A_Alw26 Location: 29884-30187 bp Feature: domain Description: met_A_Alw26 Location: 29884 -30187 bp Feature: gene Location: 31418-32956 bp Feature: domain Description: SPFH_eoslipins_u2 Location: 31451-31601 bp Feature: domain Description: SPFH_eoslipins_u2 Location: 314 51-31601 bp Feature: domain Description: SPFH_eoslipins_u2 Location: 31850-31958 bp Feature: domain Description: SPFH_eoslipins_u2 Location: 31850-31958 bp Feature: domain Description: SPFH_eoslipins_u2 Location: 32270-32909 bp Feature: domain Description: SPFH_eoslipins_u2 Location: 32270-32909 bp Feature: gene Location: 33711-34763 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 33909-34518 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 33909-34 518 bp Feature: gene Location: 34910-35206 bp Feature: gene Location: 35718-36296 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT met_A_Alw26 (TIGR02987), SPFH_eoslipins_u2 (cd13438), RVT-Retrons

Seq: LAHJ01000065.1 Nostoc linckia z18 scaffold67.1, whole genome shotgun sequence (42864 bp)
Overview 1 RT 1: 3-5293 bp Neighborhood of RT #1 [3, 5460] TPR_12 TPR_12 TPR_12 TPR_12 RVT_N RVT-GII McrA Dcm Feature: gene Location: 3-143 bp Feature: gene Location: 270-1898 bp Feature: domain Description: TPR_12 Location: 888-1101 bp Feature: domain Description: TPR_12 Location: 888-1101 bp Feature: domain Description: TPR_12 Location: 1230-1446 bp Feature: domain Description: TPR_12 Location: 1230-1446 bp Feature: domain Description: TPR_12 Location: 1473-1695 bp Feature: domain Description: TPR_12 Location: 1473-1695 bp Feature: domain Description: TPR_12 Location: 1743-1884 bp Feature: domain Description: TPR_12 Location: 1743-1884 bp Feature: gene Location: 2172-3686 bp Feature: RT Description: RVT_N Location: 2208-2448 bp Feature: RT Description: RVT_N Location: 2208-2448 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2505-3099 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25 05 -3099 bp Feature: domain Description: McrA Location: 3330-3654 bp Feature: domain Description: McrA Location: 3330-365 4 bp Feature: gene Location: 3703-3852 bp Feature: gene Location: 4222-5460 bp Feature: domain Description: Dcm Location: 4246-5293 bp Feature: domain Description: Dcm Location: 4246-5 293 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, McrA (COG4058), TPR_12 (pfam13424), Dcm (COG0270)