myRT

myRT report for GCA_002608015.1_ASM260801v1

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Seq: LAGZ01000098.1 Nostoc linckia z3 scaffold103.1, whole genome shotgun sequence (21117 bp)
Overview 1 RT 1: 5264-9984 bp Neighborhood of RT #1 [5264, 10010] DDE_Tnp_1 RVT_N RVT-GII GIIM McrA Dcm Feature: gene Location: 5264-5629 bp Feature: gene Location: 5643-6593 bp Feature: domain Description: DDE_Tnp_1 Location: 6090-6531 bp Feature: domain Description: DDE_Tnp_1 Location: 6090-6531 bp Feature: gene Location: 7277-8851 bp Feature: RT Description: RVT_N Location: 7313-7553 bp Feature: RT Description: RVT_N Location: 731 3-7553 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7610-8267 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 761 0-8267 bp Feature: domain Description: GIIM Note: maturase Location: 8324-8516 bp Feature: domain Description: GIIM Note: maturase Location: 8324-851 6 bp Feature: domain Description: McrA Location: 8543-8828 bp Feature: domain Description: McrA Location: 8543-8828 bp Feature: gene Location: 8972-9124 bp Feature: gene Location: 9582-10010 bp Feature: domain Description: Dcm Location: 9708-9984 bp Feature: domain Description: Dcm Location: 9708-9984 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1 (pfam01609), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058), Dcm (COG0270)

Seq: LAGZ01000017.1 Nostoc linckia z3 scaffold17.1, whole genome shotgun sequence (111916 bp)
Overview 1 RT 1: 4693-11062 bp Neighborhood of RT #1 [4693, 11139] TPR TPR Na_symport_lg RVT_N RVT-GII McrA S2P-M50_like_1 Feature: gene Location: 4693-5535 bp Feature: domain Description: TPR Location: 4870-5158 bp Feature: domain Description: TPR Location: 4870-5158 bp Feature: domain Description: TPR Location: 5218-5461 bp Feature: domain Description: TPR Location: 52 18-5461 bp Feature: gene Location: 5673-7328 bp Feature: domain Description: Na_symport_lg Location: 5697-7314 bp Feature: domain Description: Na_symport_lg Location: 5697-7314 bp Feature: gene Location: 7530-9110 bp Feature: RT Description: RVT_N Location: 7566-7806 bp Feature: RT Description: RVT_N Location: 7566-7806 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7863-8526 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7863-852 6 bp Feature: domain Description: McrA Location: 8760-9087 bp Feature: domain Description: McrA Location: 8760-9087 bp Feature: gene Location: 9564-9737 bp Feature: gene Location: 10519-11139 bp Feature: domain Description: S2P-M50_like_1 Location: 10567-11062 bp Feature: domain Description: S2 P-M50_like_1 Location: 10567-11062 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT S2P-M50_like_1 (cd06158), TPR (smart00028), Na_symport_lg (TIGR03648), RVT_N (pfam13655), RVT-GII, McrA (COG4058)

Seq: LAGZ01000022.1 Nostoc linckia z3 scaffold22.1, whole genome shotgun sequence (112980 bp)
Overview 1 RT 1: 204-5455 bp Neighborhood of RT #1 [204, 5484] RVT_N RVT-GII McrA PRK05402 Feature: gene Location: 204-335 bp Feature: gene Location: 570-2150 bp Feature: RT Description: RVT_N Location: 606-846 bp Feature: RT Description: RVT_N Location: 606-846 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 903-1566 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 903 -1566 bp Feature: domain Description: McrA Location: 1797-2127 bp Feature: domain Description: McrA Location: 1797-2127 bp Feature: gene Location: 2851-3030 bp Feature: gene Location: 3190-5484 bp Feature: domain Description: PRK05402 Location: 3217-5455 bp Feature: domain Description: PRK05402 Location: 3 217-5455 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK05402 (1,4-alpha-glucan branching protein GlgB), RVT_N (pfam13655), RVT-GII, McrA (COG4058)

Seq: LAGZ01000049.1 Nostoc linckia z3 scaffold49.1, whole genome shotgun sequence (63395 bp)
Overview 1 RT 1: 28177-34622 bp Neighborhood of RT #1 [28177, 34622] met_A_Alw26 SPFH_eoslipins_u2 SPFH_eoslipins_u2 SPFH_eoslipins_u2 RVT-Retrons Feature: gene Location: 28177-29619 bp Feature: domain Description: met_A_Alw26 Location: 28210-28513 bp Feature: domain Description: met_A_Alw26 Location: 28210-28513 bp Feature: gene Location: 29744-31282 bp Feature: domain Description: SPFH_eoslipins_u2 Location: 29777-29927 bp Feature: domain Description: SPFH_eoslipins_u2 Location: 29777-29927 bp Feature: domain Description: SPFH_eoslipins_u2 Location: 30176-30284 bp Feature: domain Description: SPFH_eoslipins_u2 Location: 30176-30284 bp Feature: domain Description: SPFH_eoslipins_u2 Location: 30596-31235 bp Feature: domain Description: SPFH_eoslipins_u2 Location: 30596-31235 bp Feature: gene Location: 32037-33089 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 32235-32844 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 32235-3284 4 bp Feature: gene Location: 33236-33532 bp Feature: gene Location: 34044-34622 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT met_A_Alw26 (TIGR02987), SPFH_eoslipins_u2 (cd13438), RVT-Retrons

Seq: LAGZ01000070.1 Nostoc linckia z3 scaffold72.1, whole genome shotgun sequence (42885 bp)
Overview 1 RT 1: 2-5292 bp Neighborhood of RT #1 [2, 5459] TPR_12 TPR_12 TPR_12 TPR_12 RVT_N RVT-GII McrA Dcm Feature: gene Location: 2-142 bp Feature: gene Location: 269-1897 bp Feature: domain Description: TPR_12 Location: 887-1100 bp Feature: domain Description: TPR_12 Location: 887-1100 bp Feature: domain Description: TPR_12 Location: 1229-1445 bp Feature: domain Description: TPR_12 Location: 1229-1445 bp Feature: domain Description: TPR_12 Location: 1472-1694 bp Feature: domain Description: TPR_12 Location: 1472-1694 bp Feature: domain Description: TPR_12 Location: 1742-1883 bp Feature: domain Description: TPR_12 Location: 1742-1883 bp Feature: gene Location: 2171-3685 bp Feature: RT Description: RVT_N Location: 2207-2447 bp Feature: RT Description: RVT_N Location: 2207-2447 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2504-3098 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25 04-3098 bp Feature: domain Description: McrA Location: 3329-3653 bp Feature: domain Description: McrA Location: 3329-365 3 bp Feature: gene Location: 3702-3851 bp Feature: gene Location: 4221-5459 bp Feature: domain Description: Dcm Location: 4245-5292 bp Feature: domain Description: Dcm Location: 4245 -5 292 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, McrA (COG4058), TPR_12 (pfam13424), Dcm (COG0270)