myRT

myRT report for GCA_002608075.1_ASM260807v1

Download annotations/find similar RTs

Seq: LAHA01000102.1 Nostoc linckia z4 scaffold117.1, whole genome shotgun sequence (17700 bp)
Overview 1 RT 1: 5667-12036 bp Neighborhood of RT #1 [5667, 12113] TPR TPR Na_symport_lg RVT_N RVT-GII McrA S2P-M50_like_1 Feature: gene Location: 5667-6509 bp Feature: domain Description: TPR Location: 5844-6132 bp Feature: domain Description: TPR Location: 5844-61 32 bp Feature: domain Description: TPR Location: 6192-6435 bp Feature: domain Description: TPR Location: 61 92-6435 bp Feature: gene Location: 6647-8302 bp Feature: domain Description: Na_symport_lg Location: 6671-8288 bp Feature: domain Description: Na_symport_lg Location: 6671 -8288 bp Feature: gene Location: 8504-10084 bp Feature: RT Description: RVT_N Location: 8540-8780 bp Feature: RT Description: RVT_N Location: 8540-8780 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8837-9500 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8837-9500 bp Feature: domain Description: McrA Location: 9734-10061 bp Feature: domain Description: McrA Location: 9734-1 0061 bp Feature: gene Location: 10538-10711 bp Feature: gene Location: 11493-12113 bp Feature: domain Description: S2P-M50_like_1 Location: 11541-12036 bp Feature: domain Description: S2P-M50_like_1 Location: 1 1 541 -1 2036 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT S2P-M50_like_1 (cd06158), TPR (smart00028), Na_symport_lg (TIGR03648), RVT_N (pfam13655), RVT-GII, McrA (COG4058)

Seq: LAHA01000035.1 Nostoc linckia z4 scaffold35.1, whole genome shotgun sequence (77333 bp)
Overview 1 RT 1: 42126-48571 bp Neighborhood of RT #1 [42126, 48571] met_A_Alw26 SPFH_eoslipins_u2 SPFH_eoslipins_u2 SPFH_eoslipins_u2 RVT-Retrons Feature: gene Location: 42126-43568 bp Feature: domain Description: met_A_Alw26 Location: 42159-42462 bp Feature: domain Description: met_A_Alw2 6 Location: 42 159-42 462 bp Feature: gene Location: 43693-45231 bp Feature: domain Description: SPFH_eoslipins_u2 Location: 43726-43876 bp Feature: domain Description: SPFH_eoslipins_u2 Location: 4372 6-43876 bp Feature: domain Description: SPFH_eoslipins_u2 Location: 44125-44233 bp Feature: domain Description: SPFH_eoslipins_u2 Location: 4412 5-442 33 bp Feature: domain Description: SPFH_eoslipins_u2 Location: 44545-45184 bp Feature: domain Description: SPFH_eoslipins_u2 Location: 44545-45184 bp Feature: gene Location: 45986-47038 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 46184-46793 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 46184-46793 bp Feature: gene Location: 47185-47481 bp Feature: gene Location: 47993-48571 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT met_A_Alw26 (TIGR02987), SPFH_eoslipins_u2 (cd13438), RVT-Retrons

Seq: LAHA01000069.1 Nostoc linckia z4 scaffold71.1, whole genome shotgun sequence (42893 bp)
Overview 1 RT 1: 1-5306 bp Neighborhood of RT #1 [1, 5473] TPR_12 TPR_12 TPR_12 TPR_12 RVT_N RVT-GII McrA Dcm Feature: gene Location: 1-156 bp Feature: gene Location: 283-1911 bp Feature: domain Description: TPR_12 Location: 901-1114 bp Feature: domain Description: TPR_12 Location: 901-1114 bp Feature: domain Description: TPR_12 Location: 1243-1459 bp Feature: domain Description: TPR_12 Location: 1243 -1459 bp Feature: domain Description: TPR_12 Location: 1486-1708 bp Feature: domain Description: TPR_12 Location: 1486-1708 bp Feature: domain Description: TPR_12 Location: 1756-1897 bp Feature: domain Description: TPR_12 Location: 1756-1897 bp Feature: gene Location: 2185-3699 bp Feature: RT Description: RVT_N Location: 2221-2461 bp Feature: RT Description: RVT_N Location: 2221-2461 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2518-3112 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2518-3 112 bp Feature: domain Description: McrA Location: 3343-3667 bp Feature: domain Description: McrA Location: 3 3 43 -3 667 bp Feature: gene Location: 3716-3865 bp Feature: gene Location: 4235-5473 bp Feature: domain Description: Dcm Location: 4259-5306 bp Feature: domain Description: Dcm Location: 4259-53 06 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, McrA (COG4058), TPR_12 (pfam13424), Dcm (COG0270)

Seq: LAHA01000070.1 Nostoc linckia z4 scaffold72.1, whole genome shotgun sequence (44638 bp)
Overview 1 RT 1: 1-3589 bp Neighborhood of RT #1 [1, 3589] RVT_N RVT-GII McrA SmtA Feature: gene Location: 1-138 bp Feature: gene Location: 269-1849 bp Feature: RT Description: RVT_N Location: 305-545 bp Feature: RT Description: RVT_N Location: 305-54 5 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 602-1265 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 602-1265 bp Feature: domain Description: McrA Location: 1496-1826 bp Feature: domain Description: McrA Location: 14 96-1826 bp Feature: gene Location: 2611-3273 bp Feature: domain Description: SmtA Location: 2713-3115 bp Feature: domain Description: SmtA Location: 2713-3115 bp Feature: gene Location: 3446-3589 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SmtA (COG0500), RVT_N (pfam13655), RVT-GII, McrA (COG4058)

Seq: LAHA01000009.1 Nostoc linckia z4 scaffold9.1, whole genome shotgun sequence (156124 bp)
Overview 1 RT 1: 146002-150865 bp Neighborhood of RT #1 [146002, 150865] Uma2 YfeH RVT_N RVT-GII GIIM McrA DDE_Tnp_1 Feature: gene Location: 146002-146592 bp Feature: domain Description: Uma2 Location: 146083-146527 bp Feature: domain Description: Uma2 Location: 146083-1465 27 bp Feature: gene Location: 146729-147175 bp Feature: domain Description: YfeH Location: 146735-147155 bp Feature: domain Description: YfeH Location: 146735 -14715 5 bp Feature: gene Location: 147278-148852 bp Feature: RT Description: RVT_N Location: 147314-147554 bp Feature: RT Description: RVT_N Location: 147314-1475 5 4 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 147611-148268 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 147611-148268 bp Feature: domain Description: GIIM Note: maturase Location: 148325-148517 bp Feature: domain Description: GIIM Note: maturase Location: 148325 -1485 17 bp Feature: domain Description: McrA Location: 148544-148829 bp Feature: domain Description: McrA Location: 1485 44-148829 bp Feature: gene Location: 149536-150486 bp Feature: domain Description: DDE_Tnp_1 Location: 149983-150424 bp Feature: domain Description: DDE_Tnp_1 Location: 149983-15 0424 bp Feature: gene Location: 150500-150865 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Uma2 (pfam05685), YfeH (COG0385), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058), DDE_Tnp_1 (pfam01609)