myRT

myRT report for GCA_002608105.1_ASM260810v1

Download annotations/find similar RTs

Seq: LAHB01000026.1 Nostoc linckia z6 scaffold26.1, whole genome shotgun sequence (178277 bp)
Overview 1 RT 1: 70865-77234 bp Neighborhood of RT #1 [70865, 77311] TPR TPR Na_symport_lg RVT_N RVT-GII McrA S2P-M50_like_1 Feature: gene Location: 70865-71707 bp Feature: domain Description: TPR Location: 71042-71330 bp Feature: domain Description: TPR Location: 71 042-71 330 bp Feature: domain Description: TPR Location: 71390-71633 bp Feature: domain Description: TPR Location: 71 390-71 633 bp Feature: gene Location: 71845-73500 bp Feature: domain Description: Na_symport_lg Location: 71869-73486 bp Feature: domain Description: Na_symport_lg Location: 71 869-73486 bp Feature: gene Location: 73702-75282 bp Feature: RT Description: RVT_N Location: 73738-73978 bp Feature: RT Description: RVT_N Location: 73738-73978 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 74035-74698 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 74035-74698 bp Feature: domain Description: McrA Location: 74932-75259 bp Feature: domain Description: McrA Location: 74932-75259 bp Feature: gene Location: 75736-75909 bp Feature: gene Location: 76691-77311 bp Feature: domain Description: S2P-M50_like_1 Location: 76739-77234 bp Feature: domain Description: S2P-M50_like_1 Location: 76739-77234 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TPR (smart00028), Na_symport_lg (TIGR03648), RVT_N (pfam13655), RVT-GII, McrA (COG4058), S2P-M50_like_1 (cd06158)

Seq: LAHB01000034.1 Nostoc linckia z6 scaffold34.1, whole genome shotgun sequence (80612 bp)
Overview 1 RT 1: 10742-19265 bp Neighborhood of RT #1 [10742, 19357] Dcm RVT_N RVT-GII GIIM McrA bass IF2_N KOG1803 KOG1803 Feature: gene Location: 10742-11062 bp Feature: gene Location: 11107-11535 bp Feature: domain Description: Dcm Location: 11233-11509 bp Feature: domain Description: Dcm Location: 112 33-11509 bp Feature: gene Location: 12266-13840 bp Feature: RT Description: RVT_N Location: 12302-12542 bp Feature: RT Description: RVT_N Location: 12 302 -12 542 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12599-13256 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 599-132 56 bp Feature: domain Description: GIIM Note: maturase Location: 13313-13505 bp Feature: domain Description: GIIM Note: maturase Location: 13313-13505 bp Feature: domain Description: McrA Location: 13532-13817 bp Feature: domain Description: McrA Location: 13532 -13817 bp Feature: gene Location: 14386-14634 bp Feature: domain Description: bass Location: 14395-14617 bp Feature: domain Description: bass Location: 14395-14617 bp Feature: gene Location: 14855-19357 bp Feature: domain Description: IF2_N Location: 14867-15014 bp Feature: domain Description: IF2 _N Location: 14867-15014 bp Feature: domain Description: KOG1803 Location: 15950-16565 bp Feature: domain Description: KOG1803 Location: 15950-16565 bp Feature: domain Description: KOG1803 Location: 18353-19265 bp Feature: domain Description: KOG1803 Location: 18353-192 65 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Dcm (COG0270), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058), bass (TIGR00841), IF2_N (pfam04760), KOG1803 (KOG1803, DNA helicase )

Seq: LAHB01000047.1 Nostoc linckia z6 scaffold47.1, whole genome shotgun sequence (63402 bp)
Overview 1 RT 1: 28184-34629 bp Neighborhood of RT #1 [28184, 34629] met_A_Alw26 SPFH_eoslipins_u2 SPFH_eoslipins_u2 SPFH_eoslipins_u2 RVT-Retrons Feature: gene Location: 28184-29626 bp Feature: domain Description: met_A_Alw26 Location: 28217-28520 bp Feature: domain Description: met_A_Alw26 Location: 28217-28520 bp Feature: gene Location: 29751-31289 bp Feature: domain Description: SPFH_eoslipins_u2 Location: 29784-29934 bp Feature: domain Description: SPFH_eoslipins_u2 Location: 29784-2993 4 bp Feature: domain Description: SPFH_eoslipins_u2 Location: 30183-30291 bp Feature: domain Description: SPFH_eoslipins_u2 Location: 3 0183 -3 0291 bp Feature: domain Description: SPFH_eoslipins_u2 Location: 30603-31242 bp Feature: domain Description: SPFH_eoslipins_u2 Location: 3 0603 -3 1242 bp Feature: gene Location: 32044-33096 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 32242-32851 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3 2242-3 2851 bp Feature: gene Location: 33243-33539 bp Feature: gene Location: 34051-34629 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT met_A_Alw26 (TIGR02987), SPFH_eoslipins_u2 (cd13438), RVT-Retrons

Seq: LAHB01000068.1 Nostoc linckia z6 scaffold68.1, whole genome shotgun sequence (44850 bp)
Overview 1 RT 1: 1736-7260 bp Neighborhood of RT #1 [1736, 7427] TPR_12 TPR_12 TPR_12 TPR_12 RVT_N RVT-GII McrA Dcm Feature: gene Location: 1736-2110 bp Feature: gene Location: 2237-3865 bp Feature: domain Description: TPR_12 Location: 2855-3068 bp Feature: domain Description: TPR_12 Location: 2855-3068 bp Feature: domain Description: TPR_12 Location: 3197-3413 bp Feature: domain Description: TPR_12 Location: 3197-34 13 bp Feature: domain Description: TPR_12 Location: 3440-3662 bp Feature: domain Description: TPR_12 Location: 34 4 0-3662 bp Feature: domain Description: TPR_12 Location: 3710-3851 bp Feature: domain Description: TPR_12 Location: 3710-3851 bp Feature: gene Location: 4139-5653 bp Feature: RT Description: RVT_N Location: 4175-4415 bp Feature: RT Description: RVT_N Location: 4 175-4 4 15 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4472-5066 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 4 72-5066 bp Feature: domain Description: McrA Location: 5297-5621 bp Feature: domain Description: McrA Location: 5297-5621 bp Feature: gene Location: 5670-5819 bp Feature: gene Location: 6189-7427 bp Feature: domain Description: Dcm Location: 6213-7260 bp Feature: domain Description: Dcm Location: 6213-7260 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TPR_12 (pfam13424), RVT_N (pfam13655), RVT-GII, McrA (COG4058), Dcm (COG0270)

Seq: LAHB01000069.1 Nostoc linckia z6 scaffold69.1, whole genome shotgun sequence (44252 bp)
Overview 1 RT 1: 88-3178 bp Neighborhood of RT #1 [88, 3178] RVT_N RVT-GII McrA SmtA Feature: gene Location: 88-1668 bp Feature: RT Description: RVT_N Location: 124-364 bp Feature: RT Description: RVT_N Location: 124-364 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 421-1084 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 421-1084 bp Feature: domain Description: McrA Location: 1315-1645 bp Feature: domain Description: McrA Location: 1315 -1645 bp Feature: gene Location: 2200-2862 bp Feature: domain Description: SmtA Location: 2302-2704 bp Feature: domain Description: SmtA Location: 2302-2704 bp Feature: gene Location: 3035-3178 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SmtA (COG0500), RVT_N (pfam13655), RVT-GII, McrA (COG4058)