myRT

myRT report for GCA_002608135.1_ASM260813v1

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Seq: LAHC01000144.1 Nostoc linckia z7 scaffold177.1, whole genome shotgun sequence (17619 bp)
Overview 1 RT 1: 565-3350 bp Neighborhood of RT #1 [565, 3415] RVT_N RVT-GII GIIM McrA YfeH Uma2 Feature: gene Location: 565-2139 bp Feature: RT Description: RVT_N Location: 601-841 bp Feature: RT Description: RVT_N Location: 601 -841 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 898-1555 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 898-1 555 bp Feature: domain Description: GIIM Note: maturase Location: 1612-1804 bp Feature: domain Description: GIIM Note: maturase Location: 1 61 2-1 804 bp Feature: domain Description: McrA Location: 1831-2116 bp Feature: domain Description: McrA Location: 1 831 -21 1 6 bp Feature: gene Location: 2230-2688 bp Feature: domain Description: YfeH Location: 2236-2668 bp Feature: domain Description: YfeH Location: 2236-2668 bp Feature: gene Location: 2825-3415 bp Feature: domain Description: Uma2 Location: 2906-3350 bp Feature: domain Description: Uma2 Location: 2906-3350 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YfeH (COG0385), Uma2 (pfam05685), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058)

Seq: LAHC01000176.1 Nostoc linckia z7 scaffold253.1, whole genome shotgun sequence (11449 bp)
Overview 1 RT 1: 181-5570 bp Neighborhood of RT #1 [181, 5647] Na_symport_lg RVT_N RVT-GII McrA S2P-M50_like_1 Feature: gene Location: 181-1836 bp Feature: domain Description: Na_symport_lg Location: 205-1822 bp Feature: domain Description: Na_symport_lg Location: 2 05-182 2 bp Feature: gene Location: 2038-3618 bp Feature: RT Description: RVT_N Location: 2074-2314 bp Feature: RT Description: RVT_N Location: 2 074-2 314 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2371-3034 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 371-3034 bp Feature: domain Description: McrA Location: 3268-3595 bp Feature: domain Description: McrA Location: 32 68-3595 bp Feature: gene Location: 4072-4245 bp Feature: gene Location: 5027-5647 bp Feature: domain Description: S2P-M50_like_1 Location: 5075-5570 bp Feature: domain Description: S2 P-M50_like_1 Location: 5075-5570 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Na_symport_lg (TIGR03648), RVT_N (pfam13655), RVT-GII, McrA (COG4058), S2P-M50_like_1 (cd06158)

Seq: LAHC01000179.1 Nostoc linckia z7 scaffold265.1, whole genome shotgun sequence (11010 bp)
Overview 1 RT 1: 8477-10900 bp Neighborhood of RT #1 [8477, 10923] PRK10378 RVT_N RVT-GII McrA Feature: gene Location: 8477-8794 bp Feature: domain Description: PRK10378 Location: 8606-8789 bp Feature: domain Description: PRK103 78 Location: 8606-8789 bp Feature: gene Location: 8977-9108 bp Feature: gene Location: 9343-10923 bp Feature: RT Description: RVT_N Location: 9379-9619 bp Feature: RT Description: RVT_N Location: 93 79-9619 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9676-10339 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9676-103 3 9 bp Feature: domain Description: McrA Location: 10570-10900 bp Feature: domain Description: McrA Location: 10570-10900 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10378 (inactive ferrous ion transporter periplasmic protein EfeO; Provisional), RVT_N (pfam13655), RVT-GII, McrA (COG4058)

Seq: LAHC01000029.1 Nostoc linckia z7 scaffold29.1, whole genome shotgun sequence (77151 bp)
Overview 1 RT 1: 41946-48391 bp Neighborhood of RT #1 [41946, 48391] met_A_Alw26 SPFH_eoslipins_u2 SPFH_eoslipins_u2 SPFH_eoslipins_u2 RVT-Retrons Feature: gene Location: 41946-43388 bp Feature: domain Description: met_A_Alw26 Location: 41979-42282 bp Feature: domain Description: met_A_Alw26 Location: 4 1979-4 2282 bp Feature: gene Location: 43513-45051 bp Feature: domain Description: SPFH_eoslipins_u2 Location: 43546-43696 bp Feature: domain Description: SPFH_eoslipins_u2 Location: 4 354 6-4 3696 bp Feature: domain Description: SPFH_eoslipins_u2 Location: 43945-44053 bp Feature: domain Description: SPFH_eoslipins_u2 Location: 4 394 5-4 4 053 bp Feature: domain Description: SPFH_eoslipins_u2 Location: 44365-45004 bp Feature: domain Description: SPFH_eoslipins_u2 Location: 4 4 365-4 5004 bp Feature: gene Location: 45806-46858 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 46004-46613 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4 6004 -4 6613 bp Feature: gene Location: 47005-47301 bp Feature: gene Location: 47813-48391 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT met_A_Alw26 (TIGR02987), SPFH_eoslipins_u2 (cd13438), RVT-Retrons

Seq: LAHC01000066.1 Nostoc linckia z7 scaffold68.1, whole genome shotgun sequence (44894 bp)
Overview 1 RT 1: 36146-43160 bp Neighborhood of RT #1 [36146, 43160] Dcm RVT_N RVT-GII McrA TPR_12 TPR_12 TPR_12 TPR_12 Feature: gene Location: 36146-37420 bp Feature: gene Location: 37469-38707 bp Feature: domain Description: Dcm Location: 37493-38540 bp Feature: domain Description: Dcm Location: 37493-385 40 bp Feature: gene Location: 39243-40757 bp Feature: RT Description: RVT_N Location: 39279-39519 bp Feature: RT Description: RVT_N Location: 39279-395 19 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39576-40170 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 395 76-40170 bp Feature: domain Description: McrA Location: 40401-40725 bp Feature: domain Description: McrA Location: 40401-40725 bp Feature: gene Location: 41031-42659 bp Feature: domain Description: TPR_12 Location: 41649-41862 bp Feature: domain Description: TPR_12 Location: 41649-41862 bp Feature: domain Description: TPR_12 Location: 41991-42207 bp Feature: domain Description: TPR_12 Location: 41991-42207 bp Feature: domain Description: TPR_12 Location: 42234-42456 bp Feature: domain Description: TPR_12 Location: 42234-4245 6 bp Feature: domain Description: TPR_12 Location: 42504-42645 bp Feature: domain Description: TPR_12 Location: 425 04-42645 bp Feature: gene Location: 42786-43160 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Dcm (COG0270), RVT_N (pfam13655), RVT-GII, McrA (COG4058), TPR_12 (pfam13424)