myRT

myRT report for GCA_002608145.1_ASM260814v1

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Seq: LAHD01000016.1 Nostoc linckia z8 scaffold16.1, whole genome shotgun sequence (81513 bp)
Overview 1 RT 1: 10913-19617 bp Neighborhood of RT #1 [10913, 19709] Dcm RVT_N RVT-GII GIIM McrA bass IF2_N KOG1803 KOG1803 Feature: gene Location: 10913-11233 bp Feature: gene Location: 11278-11706 bp Feature: domain Description: Dcm Location: 11404-11680 bp Feature: domain Description: Dcm Location: 1 1 404-1 1 680 bp Feature: gene Location: 12437-14011 bp Feature: RT Description: RVT_N Location: 12473-12713 bp Feature: RT Description: RVT_N Location: 1 2473-1 271 3 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12770-13427 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 2770-1 3427 bp Feature: domain Description: GIIM Note: maturase Location: 13484-13676 bp Feature: domain Description: GIIM Note: maturase Location: 1 3484-1 3676 bp Feature: domain Description: McrA Location: 13703-13988 bp Feature: domain Description: McrA Location: 1 3703-1 3988 bp Feature: gene Location: 14525-14986 bp Feature: domain Description: bass Location: 14534-14954 bp Feature: domain Description: bass Location: 1 4534-1 4954 bp Feature: gene Location: 15207-19709 bp Feature: domain Description: IF2_N Location: 15219-15366 bp Feature: domain Description: IF2_N Location: 1 521 9-1 5366 bp Feature: domain Description: KOG1803 Location: 16302-16917 bp Feature: domain Description: KOG1 803 Location: 1 6302-1 691 7 bp Feature: domain Description: KOG1803 Location: 18705-19617 bp Feature: domain Description: KOG1 803 Location: 1 8705-1 961 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Dcm (COG0270), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058), bass (TIGR00841), IF2_N (pfam04760), KOG1803 (KOG1803, DNA helicase )

Seq: LAHD01000162.1 Nostoc linckia z8 scaffold192.1, whole genome shotgun sequence (31390 bp)
Overview 1 RT 1: 5469-11838 bp Neighborhood of RT #1 [5469, 11915] TPR TPR Na_symport_lg RVT_N RVT-GII McrA S2P-M50_like_1 Feature: gene Location: 5469-6311 bp Feature: domain Description: TPR Location: 5646-5934 bp Feature: domain Description: TPR Location: 5646-5934 bp Feature: domain Description: TPR Location: 5994-6237 bp Feature: domain Description: TPR Location: 5994-62 37 bp Feature: gene Location: 6449-8104 bp Feature: domain Description: Na_symport_lg Location: 6473-8090 bp Feature: domain Description: Na_symport_lg Location: 6473-8090 bp Feature: gene Location: 8306-9886 bp Feature: RT Description: RVT_N Location: 8342-8582 bp Feature: RT Description: RVT_N Location: 8342 -8582 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8639-9302 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8639-9302 bp Feature: domain Description: McrA Location: 9536-9863 bp Feature: domain Description: McrA Location: 9536-9863 bp Feature: gene Location: 10340-10513 bp Feature: gene Location: 11295-11915 bp Feature: domain Description: S2P-M50_like_1 Location: 11343-11838 bp Feature: domain Description: S2 P-M50_like_1 Location: 11343-11838 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT S2P-M50_like_1 (cd06158), TPR (smart00028), Na_symport_lg (TIGR03648), RVT_N (pfam13655), RVT-GII, McrA (COG4058)

Seq: LAHD01000034.1 Nostoc linckia z8 scaffold34.1, whole genome shotgun sequence (63420 bp)
Overview 1 RT 1: 28765-34104 bp Neighborhood of RT #1 [28765, 35210] RVT-Retrons SPFH_eoslipins_u2 SPFH_eoslipins_u2 SPFH_eoslipins_u2 met_A_Alw26 Feature: gene Location: 28765-29343 bp Feature: gene Location: 29855-30151 bp Feature: gene Location: 30298-31350 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 30496-31105 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3 0496-3 1105 bp Feature: gene Location: 32105-33643 bp Feature: domain Description: SPFH_eoslipins_u2 Location: 32138-32288 bp Feature: domain Description: SPFH_eoslipins_u2 Location: 3 213 8-3 2288 bp Feature: domain Description: SPFH_eoslipins_u2 Location: 32537-32645 bp Feature: domain Description: SPFH_eoslipins_u2 Location: 3 253 7-3 2645 bp Feature: domain Description: SPFH_eoslipins_u2 Location: 32957-33596 bp Feature: domain Description: SPFH_eoslipins_u2 Location: 3 2957-3 3 596 bp Feature: gene Location: 33768-35210 bp Feature: domain Description: met_A_Alw26 Location: 33801-34104 bp Feature: domain Description: met_A_Alw26 Location: 3 3 801-3 4104 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, SPFH_eoslipins_u2 (cd13438), met_A_Alw26 (TIGR02987)

Seq: LAHD01000066.1 Nostoc linckia z8 scaffold70.1, whole genome shotgun sequence (42898 bp)
Overview 1 RT 1: 36102-42897 bp Neighborhood of RT #1 [36102, 42897] Dcm RVT_N RVT-GII McrA TPR_12 TPR_12 TPR_12 TPR_12 Feature: gene Location: 36102-37376 bp Feature: gene Location: 37425-38663 bp Feature: domain Description: Dcm Location: 37449-38496 bp Feature: domain Description: Dcm Location: 374 4 9-384 96 bp Feature: gene Location: 39199-40713 bp Feature: RT Description: RVT_N Location: 39235-39475 bp Feature: RT Description: RVT_N Location: 39235-394 75 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39532-40126 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39532-4 0126 bp Feature: domain Description: McrA Location: 40357-40681 bp Feature: domain Description: McrA Location: 4 0357-4 0681 bp Feature: gene Location: 40987-42615 bp Feature: domain Description: TPR_12 Location: 41605-41818 bp Feature: domain Description: TPR_12 Location: 4 1605-4 1818 bp Feature: domain Description: TPR_12 Location: 41947-42163 bp Feature: domain Description: TPR_12 Location: 4 194 7-4 2163 bp Feature: domain Description: TPR_12 Location: 42190-42412 bp Feature: domain Description: TPR_12 Location: 4 2190-4 24 12 bp Feature: domain Description: TPR_12 Location: 42460-42601 bp Feature: domain Description: TPR_12 Location: 4 24 60-4 2601 bp Feature: gene Location: 42742-42897 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Dcm (COG0270), RVT_N (pfam13655), RVT-GII, McrA (COG4058), TPR_12 (pfam13424)

Seq: LAHD01000092.1 Nostoc linckia z8 scaffold99.1, whole genome shotgun sequence (33035 bp)
Overview 1 RT 1: 8462-13248 bp Neighborhood of RT #1 [8462, 13262] PRK10378 RVT_N RVT-GII McrA PRK10378 tat_substr_1 Feature: gene Location: 8462-8779 bp Feature: domain Description: PRK10378 Location: 8591-8774 bp Feature: domain Description: PRK10378 Location: 85 91-8774 bp Feature: gene Location: 8962-9093 bp Feature: gene Location: 9328-10908 bp Feature: RT Description: RVT_N Location: 9364-9604 bp Feature: RT Description: RVT_N Location: 9364-9604 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9661-10324 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9661-10324 bp Feature: domain Description: McrA Location: 10555-10885 bp Feature: domain Description: McrA Location: 105 5 5 -10885 bp Feature: gene Location: 11057-11890 bp Feature: domain Description: PRK10378 Location: 11060-11888 bp Feature: domain Description: PRK10378 Location: 11060-11888 bp Feature: gene Location: 11991-13262 bp Feature: domain Description: tat_substr_1 Location: 12039-13248 bp Feature: domain Description: tat_substr_1 Location: 12039-13248 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10378 (inactive ferrous ion transporter periplasmic protein EfeO; Provisional), tat_substr_1 (TIGR01412), RVT_N (pfam13655), RVT-GII, McrA (COG4058)