myRT

myRT report for GCA_002608225.1_ASM260822v1

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Seq: LAHE01000162.1 Nostoc linckia z9 scaffold190.1, whole genome shotgun sequence (16717 bp)
Overview 1 RT 1: 4693-11062 bp Neighborhood of RT #1 [4693, 11139] TPR TPR Na_symport_lg RVT_N RVT-GII McrA S2P-M50_like_1 Feature: gene Location: 4693-5535 bp Feature: domain Description: TPR Location: 4870-5158 bp Feature: domain Description: TPR Location: 4870-51 58 bp Feature: domain Description: TPR Location: 5218-5461 bp Feature: domain Description: TPR Location: 521 8-5461 bp Feature: gene Location: 5673-7328 bp Feature: domain Description: Na_symport_lg Location: 5697-7314 bp Feature: domain Description: Na_symport_lg Location: 5697-731 4 bp Feature: gene Location: 7530-9110 bp Feature: RT Description: RVT_N Location: 7566-7806 bp Feature: RT Description: RVT_N Location: 7566-7806 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7863-8526 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7863-8526 bp Feature: domain Description: McrA Location: 8760-9087 bp Feature: domain Description: McrA Location: 8760-9087 bp Feature: gene Location: 9564-9737 bp Feature: gene Location: 10519-11139 bp Feature: domain Description: S2P-M50_like_1 Location: 10567-11062 bp Feature: domain Description: S2P-M50_like_1 Location: 1 0567-1 1 062 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT S2P-M50_like_1 (cd06158), TPR (smart00028), Na_symport_lg (TIGR03648), RVT_N (pfam13655), RVT-GII, McrA (COG4058)

Seq: LAHE01000029.1 Nostoc linckia z9 scaffold31.1, whole genome shotgun sequence (63811 bp)
Overview 1 RT 1: 28812-34151 bp Neighborhood of RT #1 [28812, 35257] RVT-Retrons SPFH_eoslipins_u2 SPFH_eoslipins_u2 SPFH_eoslipins_u2 met_A_Alw26 Feature: gene Location: 28812-29390 bp Feature: gene Location: 29902-30198 bp Feature: gene Location: 30345-31397 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 30543-31152 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 30543-31152 bp Feature: gene Location: 32152-33690 bp Feature: domain Description: SPFH_eoslipins_u2 Location: 32185-32335 bp Feature: domain Description: SPFH_eoslipins_u2 Location: 32 185-32 335 bp Feature: domain Description: SPFH_eoslipins_u2 Location: 32584-32692 bp Feature: domain Description: SPFH_eoslipins_u2 Location: 32 584-32 692 bp Feature: domain Description: SPFH_eoslipins_u2 Location: 33004-33643 bp Feature: domain Description: SPFH_eoslipins_u2 Location: 33004-33643 bp Feature: gene Location: 33815-35257 bp Feature: domain Description: met_A_Alw26 Location: 33848-34151 bp Feature: domain Description: met_A_Alw2 6 Location: 33848-34151 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, SPFH_eoslipins_u2 (cd13438), met_A_Alw26 (TIGR02987)

Seq: LAHE01000221.1 Nostoc linckia z9 scaffold335.1, whole genome shotgun sequence (11210 bp)
Overview 1 RT 1: 8428-11095 bp Neighborhood of RT #1 [8428, 11118] PRK10378 RVT_N RVT-GII McrA Feature: gene Location: 8428-8745 bp Feature: domain Description: PRK10378 Location: 8557-8740 bp Feature: domain Description: PRK103 78 Location: 8557-8740 bp Feature: gene Location: 9172-9303 bp Feature: gene Location: 9538-11118 bp Feature: RT Description: RVT_N Location: 9574-9814 bp Feature: RT Description: RVT_N Location: 9574-9814 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9871-10534 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9871-1053 4 bp Feature: domain Description: McrA Location: 10765-11095 bp Feature: domain Description: McrA Location: 10765-11095 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10378 (inactive ferrous ion transporter periplasmic protein EfeO; Provisional), RVT_N (pfam13655), RVT-GII, McrA (COG4058)

Seq: LAHE01000005.1 Nostoc linckia z9 scaffold5.1, whole genome shotgun sequence (121786 bp)
Overview 1 RT 1: 61830-70313 bp Neighborhood of RT #1 [61830, 70378] IF2_N KOG1803 KOG1803 bass RVT_N RVT-GII GIIM McrA YfeH Uma2 Feature: gene Location: 61830-66332 bp Feature: domain Description: IF2_N Location: 61842-61989 bp Feature: domain Description: IF2_N Location: 6184 2-61989 bp Feature: domain Description: KOG1803 Location: 62925-63540 bp Feature: domain Description: KOG1803 Location: 62925-6354 0 bp Feature: domain Description: KOG1803 Location: 65328-66240 bp Feature: domain Description: KOG1803 Location: 65328-6624 0 bp Feature: gene Location: 66553-67014 bp Feature: domain Description: bass Location: 66562-66982 bp Feature: domain Description: bass Location: 66562-66982 bp Feature: gene Location: 67528-69102 bp Feature: RT Description: RVT_N Location: 67564-67804 bp Feature: RT Description: RVT_N Location: 67564 -67804 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 67861-68518 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 67861-68518 bp Feature: domain Description: GIIM Note: maturase Location: 68575-68767 bp Feature: domain Description: GIIM Note: maturase Location: 68575-68767 bp Feature: domain Description: McrA Location: 68794-69079 bp Feature: domain Description: McrA Location: 68794 -69079 bp Feature: gene Location: 69205-69651 bp Feature: domain Description: YfeH Location: 69211-69631 bp Feature: domain Description: YfeH Location: 69211-69631 bp Feature: gene Location: 69788-70378 bp Feature: domain Description: Uma2 Location: 69869-70313 bp Feature: domain Description: Uma2 Location: 69869-70313 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IF2_N (pfam04760), KOG1803 (KOG1803, DNA helicase ), bass (TIGR00841), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058), YfeH (COG0385), Uma2 (pfam05685)

Seq: LAHE01000061.1 Nostoc linckia z9 scaffold67.1, whole genome shotgun sequence (42901 bp)
Overview 1 RT 1: 36107-42899 bp Neighborhood of RT #1 [36107, 42899] Dcm RVT_N RVT-GII McrA TPR_12 TPR_12 TPR_12 TPR_12 Feature: gene Location: 36107-37381 bp Feature: gene Location: 37430-38668 bp Feature: domain Description: Dcm Location: 37454-38501 bp Feature: domain Description: Dcm Location: 3745 4-385 01 bp Feature: gene Location: 39204-40718 bp Feature: RT Description: RVT_N Location: 39240-39480 bp Feature: RT Description: RVT_N Location: 39240-39480 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39537-40131 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 395 37-40131 bp Feature: domain Description: McrA Location: 40362-40686 bp Feature: domain Description: McrA Location: 40362-40686 bp Feature: gene Location: 40992-42620 bp Feature: domain Description: TPR_12 Location: 41610-41823 bp Feature: domain Description: TPR_12 Location: 41610-41823 bp Feature: domain Description: TPR_12 Location: 41952-42168 bp Feature: domain Description: TPR_12 Location: 4195 2-42168 bp Feature: domain Description: TPR_12 Location: 42195-42417 bp Feature: domain Description: TPR_12 Location: 42195 -42417 bp Feature: domain Description: TPR_12 Location: 42465-42606 bp Feature: domain Description: TPR_12 Location: 42465 -42606 bp Feature: gene Location: 42747-42899 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Dcm (COG0270), RVT_N (pfam13655), RVT-GII, McrA (COG4058), TPR_12 (pfam13424)