myRT

myRT report for GCA_002608345.1_ASM260834v1

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Seq: LAHG01000130.1 Nostoc linckia z14 scaffold134.1, whole genome shotgun sequence (24259 bp)
Overview 1 RT 1: 204-4490 bp Neighborhood of RT #1 [204, 4504] RVT_N RVT-GII McrA PRK10378 tat_substr_1 Feature: gene Location: 204-335 bp Feature: gene Location: 570-2150 bp Feature: RT Description: RVT_N Location: 606-846 bp Feature: RT Description: RVT_N Location: 606-846 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 903-1566 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 903-1 566 bp Feature: domain Description: McrA Location: 1797-2127 bp Feature: domain Description: McrA Location: 1 797-21 27 bp Feature: gene Location: 2299-3132 bp Feature: domain Description: PRK10378 Location: 2302-3130 bp Feature: domain Description: PRK1 0378 Location: 2302-31 30 bp Feature: gene Location: 3233-4504 bp Feature: domain Description: tat_substr_1 Location: 3281-4490 bp Feature: domain Description: tat_substr_1 Location: 3281 -4490 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10378 (inactive ferrous ion transporter periplasmic protein EfeO; Provisional), tat_substr_1 (TIGR01412), RVT_N (pfam13655), RVT-GII, McrA (COG4058)

Seq: LAHG01000222.1 Nostoc linckia z14 scaffold238.1, whole genome shotgun sequence (11101 bp)
Overview 1 RT 1: 103-5492 bp Neighborhood of RT #1 [103, 5569] Na_symport_lg RVT_N RVT-GII McrA S2P-M50_like_1 Feature: gene Location: 103-1758 bp Feature: domain Description: Na_symport_lg Location: 127-1744 bp Feature: domain Description: Na_symport_lg Location: 12 7-1744 bp Feature: gene Location: 1960-3540 bp Feature: RT Description: RVT_N Location: 1996-2236 bp Feature: RT Description: RVT_N Location: 1996-2 2 36 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2293-2956 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 2 93-2 956 bp Feature: domain Description: McrA Location: 3190-3517 bp Feature: domain Description: McrA Location: 3190-3517 bp Feature: gene Location: 3994-4167 bp Feature: gene Location: 4949-5569 bp Feature: domain Description: S2P-M50_like_1 Location: 4997-5492 bp Feature: domain Description: S2 P-M50_like_1 Location: 4997-5492 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Na_symport_lg (TIGR03648), RVT_N (pfam13655), RVT-GII, McrA (COG4058), S2P-M50_like_1 (cd06158)

Seq: LAHG01000027.1 Nostoc linckia z14 scaffold27.1, whole genome shotgun sequence (63884 bp)
Overview 1 RT 1: 28697-35142 bp Neighborhood of RT #1 [28697, 35142] met_A_Alw26 SPFH_eoslipins_u2 SPFH_eoslipins_u2 SPFH_eoslipins_u2 RVT-Retrons Feature: gene Location: 28697-30139 bp Feature: domain Description: met_A_Alw26 Location: 28730-29033 bp Feature: domain Description: met_A_Alw26 Location: 2873 0-2903 3 bp Feature: gene Location: 30264-31802 bp Feature: domain Description: SPFH_eoslipins_u2 Location: 30297-30447 bp Feature: domain Description: SPFH_eoslipins_u2 Location: 3 0297-3 0447 bp Feature: domain Description: SPFH_eoslipins_u2 Location: 30696-30804 bp Feature: domain Description: SPFH_eoslipins_u2 Location: 3 0696-3 0804 bp Feature: domain Description: SPFH_eoslipins_u2 Location: 31116-31755 bp Feature: domain Description: SPFH_eoslipins_u2 Location: 3 1116-3 1755 bp Feature: gene Location: 32557-33609 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 32755-33364 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3 2755-3 3 3 64 bp Feature: gene Location: 33756-34052 bp Feature: gene Location: 34564-35142 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT met_A_Alw26 (TIGR02987), SPFH_eoslipins_u2 (cd13438), RVT-Retrons

Seq: LAHG01000057.1 Nostoc linckia z14 scaffold58.1, whole genome shotgun sequence (42821 bp)
Overview 1 RT 1: 1-5303 bp Neighborhood of RT #1 [1, 5470] TPR_12 TPR_12 TPR_12 TPR_12 RVT_N RVT-GII McrA Dcm Feature: gene Location: 1-153 bp Feature: gene Location: 280-1908 bp Feature: domain Description: TPR_12 Location: 898-1111 bp Feature: domain Description: TPR_12 Location: 898-1111 bp Feature: domain Description: TPR_12 Location: 1240-1456 bp Feature: domain Description: TPR_12 Location: 124 0-14 56 bp Feature: domain Description: TPR_12 Location: 1483-1705 bp Feature: domain Description: TPR_12 Location: 14 83-1705 bp Feature: domain Description: TPR_12 Location: 1753-1894 bp Feature: domain Description: TPR_12 Location: 1753-1894 bp Feature: gene Location: 2182-3696 bp Feature: RT Description: RVT_N Location: 2218-2458 bp Feature: RT Description: RVT_N Location: 2218-24 58 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2515-3109 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2515-3109 bp Feature: domain Description: McrA Location: 3340-3664 bp Feature: domain Description: McrA Location: 334 0-3664 bp Feature: gene Location: 3713-3862 bp Feature: gene Location: 4232-5470 bp Feature: domain Description: Dcm Location: 4256-5303 bp Feature: domain Description: Dcm Location: 4 256-5303 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, McrA (COG4058), TPR_12 (pfam13424), Dcm (COG0270)

Seq: LAHG01000007.1 Nostoc linckia z14 scaffold7.1, whole genome shotgun sequence (102551 bp)
Overview 1 RT 1: 32172-40628 bp Neighborhood of RT #1 [32172, 40720] Uma2 YfeH RVT_N RVT-GII GIIM McrA bass IF2_N KOG1803 KOG1803 Feature: gene Location: 32172-32762 bp Feature: domain Description: Uma2 Location: 32253-32697 bp Feature: domain Description: Uma2 Location: 3225 3-32697 bp Feature: gene Location: 32899-33357 bp Feature: domain Description: YfeH Location: 32905-33337 bp Feature: domain Description: YfeH Location: 32905 -33337 bp Feature: gene Location: 33448-35022 bp Feature: RT Description: RVT_N Location: 33484-33724 bp Feature: RT Description: RVT_N Location: 33484-33724 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33781-34438 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33781-34438 bp Feature: domain Description: GIIM Note: maturase Location: 34495-34687 bp Feature: domain Description: GIIM Note: maturase Location: 34495 -34687 bp Feature: domain Description: McrA Location: 34714-34999 bp Feature: domain Description: McrA Location: 34714-34999 bp Feature: gene Location: 35536-35997 bp Feature: domain Description: bass Location: 35545-35965 bp Feature: domain Description: bass Location: 35 5 45 -35 965 bp Feature: gene Location: 36218-40720 bp Feature: domain Description: IF2_N Location: 36230-36377 bp Feature: domain Description: IF2_N Location: 36230-36377 bp Feature: domain Description: KOG1803 Location: 37313-37928 bp Feature: domain Description: KOG1803 Location: 37313-37928 bp Feature: domain Description: KOG1803 Location: 39716-40628 bp Feature: domain Description: KOG1803 Location: 39716-40628 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Uma2 (pfam05685), YfeH (COG0385), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058), bass (TIGR00841), IF2_N (pfam04760), KOG1803 (KOG1803, DNA helicase )