myRT

myRT report for GCA_002608565.1_ASM260856v1

Download annotations/find similar RTs

Seq: LIXM01000008.1 Vibrio sp. PID17_43 contig_8, whole genome shotgun sequence (164170 bp)
Overview 1 RT 1: 9300-14942 bp Neighborhood of RT #1 [9300, 14995] RAMP_I_III Cas10_III RVT-CRISPR Cas1_I-II-III Cas2_I_II_III Cas2_I_II_III Feature: gene Location: 9300-9905 bp Ori: PHJ42199.1 Feature: domain Description: RAMP_I_III Location: 9342-9861 bp Feature: domain Description: RAMP_I_III Location: 9342-9861 bp Feature: gene Location: 9902-11851 bp Ori: PHJ42200.1 Feature: domain Description: Cas10_III Location: 10697-11180 bp Feature: domain Description: Cas1 0_III Location: 1 0697-1 1 1 80 bp Feature: gene Location: 12349-14421 bp Ori: PHJ42201.1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 12544-13156 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 1 2544-1 31 56 bp Feature: domain Description: Cas1_I-II-III Location: 13444-14380 bp Feature: domain Description: Cas1 _I-II-III Location: 1 3444-1 4380 bp Feature: gene Location: 14421-14708 bp Ori: PHJ42202.1 Feature: domain Description: Cas2_I_II_III Location: 14442-14652 bp Feature: domain Description: Cas2_I_II_III Location: 1 4442-1 4652 bp Feature: gene Location: 14717-14995 bp Ori: PHJ42203.1 Feature: domain Description: Cas2_I_II_III Location: 14726-14942 bp Feature: domain Description: Cas2_I_II_III Location: 1 4726-1 4942 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RAMP_I_III (cl21471), Cas10_III (cl21742), RVT-CRISPR, Cas1_I-II-III (cl00656), Cas2_I_II_III (cl11442)

Seq: LIXM01000001.1 Vibrio sp. PID17_43 contig_1, whole genome shotgun sequence (312882 bp)
Overview 1 RT 1: 180438-184884 bp Neighborhood of RT #1 [180438, 184961] HTH_ARAC DUF4345 RVT_N RVT-GII GIIM RluA SWEET Feature: gene Location: 180438-180638 bp Ori: PHJ43518.1 Feature: domain Description: HTH_ARAC Location: 180441-180579 bp Feature: domain Description: HTH_ARAC Location: 180441-180579 bp Feature: gene Location: 180944-181324 bp Ori: PHJ43519.1 Feature: domain Description: DUF4345 Location: 180959-181310 bp Feature: domain Description: DUF4345 Location: 180959-181310 bp Feature: gene Location: 181873-183504 bp Ori: PHJ43520.1 Feature: domain Description: RVT_N Location: 182080-182323 bp Feature: domain Description: RVT_N Location: 182 080-182 32 3 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 182368-182995 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 182 368-182 995 bp Feature: domain Description: GIIM Note: maturase Location: 183055-183280 bp Feature: domain Description: GIIM Note: maturase Location: 183055-1832 80 bp Feature: gene Location: 183754-184485 bp Ori: PHJ43521.1 Feature: domain Description: RluA Location: 183814-184483 bp Feature: domain Description: RluA Location: 183814-184483 bp Feature: gene Location: 184668-184961 bp Ori: PHJ43522.1 Feature: domain Description: SWEET Location: 184707-184884 bp Feature: domain Description: SWEET Location: 184707-184884 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_ARAC (smart00342), DUF4345 (pfam14248), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), RluA (COG0564), SWEET (COG4095)