myRT

myRT report for GCA_002631495.1_ASM263149v1

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Seq: NXOR01000002.1 Escherichia coli strain 42_Esco_HA-DE 70241435_contig_2, whole genome shotgun sequence (665244 bp)
Overview 1 RT 1: 71826-75036 bp Neighborhood of RT #1 [71826, 75056] YhhI YhhI IS285 RVT-GII PRK15434 Feature: gene Location: 71826-72677 bp Feature: domain Description: YhhI Location: 71829-72189 bp Feature: domain Description: YhhI Location: 71 829-721 89 bp Feature: domain Description: YhhI Location: 72249-72603 bp Feature: domain Description: YhhI Location: 72249-72603 bp Feature: gene Location: 72781-73539 bp Feature: domain Description: IS285 Location: 72811-73501 bp Feature: domain Description: IS285 Location: 7281 1 -73501 bp Feature: gene Location: 73588-73881 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 73759-73867 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 73759-73867 bp Feature: gene Location: 74306-74554 bp Feature: gene Location: 74583-75056 bp Feature: domain Description: PRK15434 Location: 74586-75036 bp Feature: domain Description: PRK1 5434 Location: 74586-75036 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YhhI (COG5433), IS285 (COG3328), RVT-GII, PRK15434 (GDP-mannose mannosyl hydrolase)

Seq: NXOR01000025.1 Escherichia coli strain 42_Esco_HA-DE 70241435_contig_25, whole genome shotgun sequence (24563 bp)
Overview 1 RT 1: 19268-22996 bp Neighborhood of RT #1 [19268, 23001] RVT-GII Intron_maturas2 HNHc PRK13732 DUF905 Feature: gene Location: 19268-19474 bp Feature: gene Location: 19808-20017 bp Feature: gene Location: 20152-22053 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20419-21250 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 0419-2 12 50 bp Feature: domain Description: Intron_maturas2 Location: 21364-21622 bp Feature: domain Description: Intron_maturas2 Location: 2 1364-2 162 2 bp Feature: domain Description: HNHc Note: nucleases Location: 21796-21958 bp Feature: domain Description: HNHc Note: nucleases Location: 2 1796-2 1958 bp Feature: gene Location: 22248-22700 bp Feature: domain Description: PRK13732 Location: 22254-22698 bp Feature: domain Description: PRK13732 Location: 2 2 2 54-2 2 698 bp Feature: gene Location: 22768-23001 bp Feature: domain Description: DUF905 Location: 22798-22996 bp Feature: domain Description: DUF905 Location: 2 2 798-2 2 996 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PRK13732 (single-stranded DNA-binding protein; Provisional), DUF905 (pfam06006)

Seq: NXOR01000029.1 Escherichia coli strain 42_Esco_HA-DE 70241435_contig_29, whole genome shotgun sequence (139894 bp)
Overview 1 RT 1: 51153-55035 bp Neighborhood of RT #1 [51153, 55040] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 51153-51611 bp Feature: domain Description: dut Location: 51159-51606 bp Feature: domain Description: dut Location: 51159-51606 bp Feature: gene Location: 51718-52314 bp Feature: domain Description: slmA Location: 51724-52300 bp Feature: domain Description: slmA Location: 51724-523 00 bp Feature: gene Location: 52360-53319 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 52495-53044 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 52495-53 044 bp Feature: gene Location: 53617-54273 bp Feature: domain Description: pyrE Location: 53635-54268 bp Feature: domain Description: pyrE Location: 53 63 5-54268 bp Feature: gene Location: 54324-55040 bp Feature: domain Description: rph Location: 54327-55035 bp Feature: domain Description: rph Location: 543 27-5503 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dut (TIGR00576), slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173)