myRT

myRT report for GCA_002631755.1_ASM263175v1

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Seq: NSHF01000012.1 Nostoc sp. 'Peltigera malacea cyanobiont' DB3992 scaffold12, whole genome shotgun sequence (42127 bp)
Overview 1 RT 1: 29139-31443 bp Neighborhood of RT #1 [29139, 31443] RaiA Ribosom_S30AE_C BaeS RVT-Retrons Feature: gene Location: 29139-29786 bp Feature: domain Description: RaiA Location: 29142-29472 bp Feature: domain Description: RaiA Location: 291 42-29472 bp Feature: domain Description: Ribosom_S30AE_C Location: 29526-29688 bp Feature: domain Description: Ribosom_S30AE_C Location: 29526-29688 bp Feature: gene Location: 30104-30403 bp Feature: domain Description: BaeS Location: 30134-30401 bp Feature: domain Description: BaeS Location: 301 34-30401 bp Feature: gene Location: 30391-30780 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 30403-30562 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 30403-30562 bp Feature: gene Location: 30857-31108 bp Feature: gene Location: 31246-31443 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RaiA (COG1544), Ribosom_S30AE_C (pfam16321), BaeS (COG0642), RVT-Retrons

Seq: NSHF01000129.1 Nostoc sp. 'Peltigera malacea cyanobiont' DB3992 scaffold129, whole genome shotgun sequence (17391 bp)
Overview 1 RT 1: 13923-17368 bp Neighborhood of RT #1 [13923, 17388] TagH Wzt_C-like TagG RVT-GII McrA Feature: gene Location: 13923-15233 bp Feature: domain Description: TagH Location: 13938-14658 bp Feature: domain Description: TagH Location: 13938-14658 bp Feature: domain Description: Wzt_C-like Location: 14781-15195 bp Feature: domain Description: Wzt_C-like Location: 14781-15195 bp Feature: gene Location: 15402-16262 bp Feature: domain Description: TagG Location: 15474-16260 bp Feature: domain Description: TagG Location: 15474-162 60 bp Feature: gene Location: 16723-17388 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16729-16804 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1672 9-16804 bp Feature: domain Description: McrA Location: 17038-17368 bp Feature: domain Description: McrA Location: 17038-17368 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TagH (COG1134), Wzt_C-like (cl15685), TagG (COG1682), RVT-GII, McrA (COG4058)

Seq: NSHF01000024.1 Nostoc sp. 'Peltigera malacea cyanobiont' DB3992 scaffold24, whole genome shotgun sequence (33808 bp)
Overview 1 RT 1: 3-2718 bp Neighborhood of RT #1 [3, 2718] RVT_N RVT-GII Feature: gene Location: 3-920 bp Feature: domain Description: RVT_N Location: 63-255 bp Feature: domain Description: RVT_N Location: 63 -255 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 312-921 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 12-921 bp Feature: gene Location: 1058-1258 bp Feature: gene Location: 1678-2718 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII

Seq: NSHF01000242.1 Nostoc sp. 'Peltigera malacea cyanobiont' DB3992 scaffold242, whole genome shotgun sequence (11403 bp)
Overview 1 RT 1: 1116-3092 bp Neighborhood of RT #1 [1116, 3184] RVT-UG7 arc_metj Feature: gene Location: 1116-2033 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 1497-1929 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 14 97-1929 bp Feature: gene Location: 2458-2682 bp Feature: gene Location: 2969-3184 bp Feature: domain Description: arc_metj Location: 2972-3092 bp Feature: domain Description: arc_metj Location: 2972-3092 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG7, arc_metj (LOAD_arc_metj)

Seq: NSHF01000299.1 Nostoc sp. 'Peltigera malacea cyanobiont' DB3992 scaffold299, whole genome shotgun sequence (9698 bp)
Overview 1 RT 1: 2730-5994 bp Neighborhood of RT #1 [2730, 5994] Ser_Recombinase DUF5372 RVT-GII GIIM DUF29 Feature: gene Location: 2730-3044 bp Feature: domain Description: Ser_Recombinase Location: 2778-3036 bp Feature: domain Description: Ser_Recombinase Location: 2778-3036 bp Feature: gene Location: 3056-3601 bp Feature: domain Description: DUF5372 Location: 3182-3395 bp Feature: domain Description: DUF5 372 Location: 3182-3395 bp Feature: gene Location: 3763-4614 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3790-4162 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3790-4162 bp Feature: domain Description: GIIM Note: maturase Location: 4219-4417 bp Feature: domain Description: GIIM Note: maturase Location: 4219-4417 bp Feature: gene Location: 4878-5153 bp Feature: domain Description: DUF29 Location: 4881-5133 bp Feature: domain Description: DUF29 Location: 4881-5 133 bp Feature: gene Location: 5656-5994 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Ser_Recombinase (cl02788), DUF5372 (pfam17342), RVT-GII, GIIM (pfam08388), DUF29 (pfam01724)

Seq: NSHF01000557.1 Nostoc sp. 'Peltigera malacea cyanobiont' DB3992 scaffold557, whole genome shotgun sequence (4207 bp)
Overview 1 RT 1: 1-2407 bp Neighborhood of RT #1 [1, 2407] RVT_N RVT-GII Feature: gene Location: 1-222 bp Feature: gene Location: 814-1536 bp Feature: domain Description: RVT_N Location: 850-1090 bp Feature: domain Description: RVT_N Location: 850-1090 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1147-1483 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1147-1483 bp Feature: gene Location: 1644-1811 bp Feature: gene Location: 2279-2407 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII

Seq: NSHF01000590.1 Nostoc sp. 'Peltigera malacea cyanobiont' DB3992 scaffold590, whole genome shotgun sequence (3841 bp)
Overview 1 RT 1: 3-3805 bp Neighborhood of RT #1 [3, 3840] COG5635 RVT-GII GIIM HNH RVT_N RVT-GII Pentapeptide Pentapeptide Pentapeptide Feature: gene Location: 3-686 bp Feature: domain Description: COG5635 Location: 60-684 bp Feature: domain Description: COG5635 Location: 60-684 bp Feature: gene Location: 796-1824 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 802-961 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 802-961 bp Feature: domain Description: GIIM Note: maturase Location: 1066-1276 bp Feature: domain Description: GIIM Note: maturase Location: 1066-127 6 bp Feature: domain Description: HNH Note: nucleases Location: 1528-1663 bp Feature: domain Description: HNH Note: nucleases Location: 1528-1663 bp Feature: gene Location: 1869-2687 bp Feature: domain Description: RVT_N Location: 1914-2160 bp Feature: domain Description: RVT_N Location: 1914-2160 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2202-2658 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2202-2658 bp Feature: gene Location: 3449-3589 bp Feature: domain Description: Pentapeptide Location: 3467-3554 bp Feature: domain Description: Pentapeptide Location: 3467 -3554 bp Feature: gene Location: 3610-3840 bp Feature: domain Description: Pentapeptide Location: 3625-3682 bp Feature: domain Description: Pentapeptide Location: 3625-3682 bp Feature: domain Description: Pentapeptide Location: 3703-3805 bp Feature: domain Description: Pentapeptide Location: 37 03-3805 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG5635 (Predicted NTPase, NACHT family domain ), RVT-GII, GIIM (pfam08388), HNH (pfam01844), RVT_N (pfam13655), Pentapeptide (pfam00805)

Seq: NSHF01000071.1 Nostoc sp. 'Peltigera malacea cyanobiont' DB3992 scaffold71, whole genome shotgun sequence (23085 bp)
Overview 1 RT 1: 13839-20398 bp Neighborhood of RT #1 [13839, 20469] arc_metj RVT-UG25 UvrD DnaQ UvrD excise Feature: gene Location: 13839-14834 bp Feature: domain Description: arc_metj Location: 14076-14181 bp Feature: domain Description: arc_metj Location: 14076-1418 1 bp Feature: gene Location: 15020-15625 bp Feature: gene Location: 15859-17301 bp Feature: RT Description: RVT-UG25 Note: UG25 RT Location: 15865-16120 bp Feature: RT Description: RVT-UG25 Note: UG25 RT Location: 158 65-16120 bp Feature: gene Location: 17319-19775 bp Feature: domain Description: UvrD Location: 17334-18603 bp Feature: domain Description: UvrD Location: 17334-18 603 bp Feature: domain Description: DnaQ Location: 18678-19185 bp Feature: domain Description: DnaQ Location: 18 678 -1918 5 bp Feature: domain Description: UvrD Location: 19236-19764 bp Feature: domain Description: UvrD Location: 19236-19764 bp Feature: gene Location: 20017-20469 bp Feature: domain Description: excise Location: 20257-20398 bp Feature: domain Description: excise Location: 20257-20398 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT arc_metj (LOAD_arc_metj), RVT-UG25, UvrD (COG0210), DnaQ (COG0847), excise (TIGR01764)

Seq: NSHF01000928.1 Nostoc sp. 'Peltigera malacea cyanobiont' DB3992 scaffold928, whole genome shotgun sequence (1819 bp)
Overview 1 RT 1: 1-1777 bp Neighborhood of RT #1 [1, 1818] RVT_N RVT-GII RVT-GII Feature: gene Location: 1-267 bp Feature: gene Location: 779-1315 bp Feature: domain Description: RVT_N Location: 815-1055 bp Feature: domain Description: RVT_N Location: 815-1055 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1112-1208 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1112-1208 bp Feature: gene Location: 1378-1818 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1399-1777 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 139 9 -1777 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII