myRT

myRT report for GCA_002632225.1_ASM263222v1

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Seq: NTLT01000991.1 Alteromonas sp. ESRF-bin4 contig-1439000293, whole genome shotgun sequence (4525 bp)
Overview 1 RT 1: 241-4392 bp Neighborhood of RT #1 [241, 4523] PRK06958 RVT-GII Intron_maturas2 HNHc DUF3857 Feature: gene Location: 241-828 bp Feature: domain Description: PRK06958 Location: 256-826 bp Feature: domain Description: PRK06958 Location: 256-826 bp Feature: gene Location: 1450-3354 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1741-2575 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 741 -2575 bp Feature: domain Description: Intron_maturas2 Location: 2698-3043 bp Feature: domain Description: Intron_maturas2 Location: 2698-3043 bp Feature: domain Description: HNHc Note: nucleases Location: 3106-3283 bp Feature: domain Description: HNHc Note: nucleases Location: 31 06-3283 bp Feature: gene Location: 3681-4523 bp Feature: domain Description: DUF3857 Location: 3882-4392 bp Feature: domain Description: DUF3857 Location: 3882-4392 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PRK06958 (single-stranded DNA-binding protein; Provisional)

Seq: NTLT01000184.1 Alteromonas sp. ESRF-bin4 contig-243000292, whole genome shotgun sequence (3155 bp)
Overview 1 RT 1: 3-3142 bp Neighborhood of RT #1 [3, 3153] DDE_Tnp_IS66 DDE_Tnp_IS66_C RVT-GII GIIM HNHc LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 DDE_Tnp_IS66_C Feature: gene Location: 3-230 bp Feature: domain Description: DDE_Tnp_IS66 Location: 6-81 bp Feature: domain Description: DDE_Tnp_IS66 Location: 6-81 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 108-177 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 108-177 bp Feature: gene Location: 258-1394 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 264-711 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 64-711 bp Feature: domain Description: GIIM Note: maturase Location: 771-996 bp Feature: domain Description: GIIM Note: maturase Location: 771-996 bp Feature: domain Description: HNHc Note: nucleases Location: 1197-1344 bp Feature: domain Description: HNHc Note: nucleases Location: 1197-1344 bp Feature: gene Location: 1699-3153 bp Feature: domain Description: LZ_Tnp_IS66 Location: 1780-1972 bp Feature: domain Description: LZ_Tnp_IS66 Location: 1780-1972 bp Feature: domain Description: zf-IS66 Location: 1999-2128 bp Feature: domain Description: zf-IS66 Location: 1999-2 12 8 bp Feature: domain Description: DDE_Tnp_IS66 Location: 2188-3049 bp Feature: domain Description: DDE_Tnp_IS66 Location: 2 188-3049 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 3070-3142 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 3070-3142 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: NTLT01000293.1 Alteromonas sp. ESRF-bin4 contig-514000104, whole genome shotgun sequence (2545 bp)
Overview 1 RT 1: 661-2543 bp Neighborhood of RT #1 [661, 2543] TnpB_IS66 RVT_N RVT-GII Feature: gene Location: 661-981 bp Feature: gene Location: 978-1223 bp Feature: domain Description: TnpB_IS66 Location: 1005-1200 bp Feature: domain Description: TnpB_IS66 Location: 1005-1200 bp Feature: gene Location: 1765-2340 bp Feature: RT Description: RVT_N Location: 1822-2065 bp Feature: RT Description: RVT_N Location: 1822-2065 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2110-2314 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2110-23 14 bp Feature: gene Location: 2415-2543 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, TnpB_IS66 (pfam05717)