myRT

myRT report for GCA_002632345.1_ASM263234v1

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Seq: NSJQ01000001.1 Candidatus Scalindua rubra isolate Ru_enrich_A1 NODE_12_length_270402_cov_12.653, whole genome shotgun sequence (270402 bp)
Overview 1 RT 1: 88156-92827 bp Neighborhood of RT #1 [88156, 92827] RVT-GII INT_Rci_Hp1_C Feature: gene Location: 88156-89733 bp Feature: gene Location: 90184-90663 bp Feature: gene Location: 90945-91307 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 91044-91245 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 91 044-91 245 bp Feature: gene Location: 91704-92441 bp Feature: domain Description: INT_Rci_Hp1_C Location: 91851-92310 bp Feature: domain Description: INT_Rci_Hp1 _C Location: 91 851 -9231 0 bp Feature: gene Location: 92483-92827 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, INT_Rci_Hp1_C (cd00796)

Seq: NSJQ01000014.1 Candidatus Scalindua rubra isolate Ru_enrich_A1 NODE_157_length_76664_cov_14.2299, whole genome shotgun sequence (76664 bp)
Overview 1 RT 1: 60955-64114 bp Neighborhood of RT #1 [60955, 64114] Cas1_I-II-III RVT-CRISPR RAYT Feature: gene Location: 60955-61260 bp Feature: gene Location: 61284-62285 bp Feature: domain Description: Cas1_I-II-III Location: 61293-62250 bp Feature: domain Description: Cas1_I-II-III Location: 612 93-62 2 50 bp Feature: gene Location: 62320-63018 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 62326-62890 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 62 32 6-62 890 bp Feature: gene Location: 63223-63849 bp Feature: domain Description: RAYT Location: 63265-63736 bp Feature: domain Description: RAYT Location: 632 65-63736 bp Feature: gene Location: 63872-64114 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cas1_I-II-III (cl00656), RVT-CRISPR, RAYT (COG1943)

Seq: NSJQ01000015.1 Candidatus Scalindua rubra isolate Ru_enrich_A1 NODE_158_length_76305_cov_14.0059, whole genome shotgun sequence (76305 bp)
Overview 1 RT 1: 10786-13828 bp Neighborhood of RT #1 [10786, 13836] RVT-GII Fur Feature: gene Location: 10786-10950 bp Feature: gene Location: 11085-11408 bp Feature: gene Location: 11437-12774 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11716-12403 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11716-12403 bp Feature: gene Location: 13000-13290 bp Feature: gene Location: 13360-13836 bp Feature: domain Description: Fur Location: 13423-13828 bp Feature: domain Description: Fur Location: 13 423 -13 828 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Fur (COG0735)

Seq: NSJQ01000073.1 Candidatus Scalindua rubra isolate Ru_enrich_A1 NODE_2071_length_9710_cov_15.7336, whole genome shotgun sequence (9710 bp)
Overview 1 RT 1: 1253-4553 bp Neighborhood of RT #1 [1253, 4570] integrase_gron Y1_Tnp Bac_DnaA_C RVT-GII HigB_toxin Feature: gene Location: 1253-1954 bp Feature: domain Description: integrase_gron Location: 1262-1928 bp Feature: domain Description: integrase_gron Location: 1262-1928 bp Feature: gene Location: 1986-2996 bp Feature: domain Description: Y1_Tnp Location: 2022-2349 bp Feature: domain Description: Y1_Tnp Location: 2022-234 9 bp Feature: domain Description: Bac_DnaA_C Location: 2727-2976 bp Feature: domain Description: Bac_DnaA_C Location: 2727-2976 bp Feature: gene Location: 3020-3265 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3056-3239 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3056-3239 bp Feature: gene Location: 4056-4280 bp Feature: gene Location: 4283-4570 bp Feature: domain Description: HigB_toxin Location: 4343-4553 bp Feature: domain Description: HigB_toxin Location: 4 34 3-4 553 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT integrase_gron (TIGR02249), Y1_Tnp (pfam01797), Bac_DnaA_C (smart00760), RVT-GII, HigB_toxin (pfam09907)

Seq: NSJQ01000043.1 Candidatus Scalindua rubra isolate Ru_enrich_A1 NODE_598_length_28298_cov_16.6485, whole genome shotgun sequence (28298 bp)
Overview 1 RT 1: 22172-27217 bp Neighborhood of RT #1 [22172, 27217] RVT-DGRs MutS_I UvrA Feature: gene Location: 22172-22408 bp Feature: gene Location: 22339-22602 bp Feature: gene Location: 22753-23817 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 22759-23203 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2275 9-23203 bp Feature: domain Description: MutS_I Location: 23515-23740 bp Feature: domain Description: MutS_I Location: 235 15 -23740 bp Feature: gene Location: 23938-26850 bp Feature: domain Description: UvrA Location: 23944-26848 bp Feature: domain Description: UvrA Location: 23944-26848 bp Feature: gene Location: 26924-27217 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, MutS_I (pfam01624), UvrA (COG0178)

Seq: NSJQ01000052.1 Candidatus Scalindua rubra isolate Ru_enrich_A1 NODE_709_length_24230_cov_13.4912, whole genome shotgun sequence (24230 bp)
Overview 1 RT 1: 2668-6668 bp Neighborhood of RT #1 [2668, 6668] Cas2_I_II_III RVT-CRISPR GIIM Cas1_I-II-III Feature: gene Location: 2668-2958 bp Feature: gene Location: 3048-3323 bp Feature: domain Description: Cas2_I_II_III Location: 3057-3267 bp Feature: domain Description: Cas2_I_II_III Location: 3057-326 7 bp Feature: gene Location: 3670-5976 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 3880-4504 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 3880-4504 bp Feature: domain Description: GIIM Note: maturase Location: 4561-4756 bp Feature: domain Description: GIIM Note: maturase Location: 456 1-4756 bp Feature: domain Description: Cas1_I-II-III Location: 4972-5941 bp Feature: domain Description: Cas1_I-II-III Location: 4972-5941 bp Feature: gene Location: 6196-6435 bp Feature: gene Location: 6453-6668 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cas2_I_II_III (cl11442), RVT-CRISPR, GIIM (pfam08388), Cas1_I-II-III (cl00656)