myRT

myRT report for GCA_002632725.1_ASM263272v1

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Seq: NJAI01000001.1 Xenorhabdus hominickii strain DSM 17903 Xhom_1, whole genome shotgun sequence (1579613 bp)
Overview 1 RT 1: 186466-190713 bp Neighborhood of RT #1 [186466, 190713] INT_RitA_C_like RVT-Retrons RVT-Retrons HipB Feature: gene Location: 186466-188238 bp Feature: gene Location: 188501-189097 bp Feature: domain Description: INT_RitA_C_like Location: 188549-189080 bp Feature: domain Description: INT_RitA_C_like Location: 1 88549-1 89080 bp Feature: gene Location: 189273-189827 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 189279-189594 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 89279-1 89594 bp Feature: gene Location: 189767-190225 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 189950-190163 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 89950-1 901 63 bp Feature: gene Location: 190203-190523 bp Feature: domain Description: HipB Location: 190221-190416 bp Feature: domain Description: HipB Location: 1 90221 -1 9041 6 bp Feature: gene Location: 190552-190713 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_RitA_C_like (cd01188), RVT-Retrons, HipB (COG1396)

Seq: NJAI01000003.1 Xenorhabdus hominickii strain DSM 17903 Xhom_3, whole genome shotgun sequence (545410 bp)
Overview 1 RT 1: 150220-154467 bp Neighborhood of RT #1 [150220, 154467] HipB RVT-Retrons RVT-Retrons INT_RitA_C_like Feature: gene Location: 150220-150381 bp Feature: gene Location: 150422-150730 bp Feature: domain Description: HipB Location: 150428-150623 bp Feature: domain Description: HipB Location: 15042 8-15062 3 bp Feature: gene Location: 150708-151166 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 150891-151104 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 150891-151104 bp Feature: gene Location: 151106-151660 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 151112-151427 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 151112 -15142 7 bp Feature: gene Location: 151836-152432 bp Feature: domain Description: INT_RitA_C_like Location: 151884-152415 bp Feature: domain Description: INT_RitA_C_like Location: 151884-152 415 bp Feature: gene Location: 152695-154467 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HipB (COG1396), RVT-Retrons, INT_RitA_C_like (cd01188)

Seq: NJAI01000006.1 Xenorhabdus hominickii strain DSM 17903 Xhom_6, whole genome shotgun sequence (419919 bp)
Overview 1 RT 1: 134052-136716 bp Neighborhood of RT #1 [134052, 136775] PRK10475 RVT-GII GIIM PRK07201 Feature: gene Location: 134052-134924 bp Feature: domain Description: PRK10475 Location: 134055-134922 bp Feature: domain Description: PRK10475 Location: 13 4055-13 4922 bp Feature: gene Location: 135124-135495 bp Feature: gene Location: 135772-136236 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 135796-136141 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13 5796-13 6141 bp Feature: gene Location: 136251-136484 bp Feature: domain Description: GIIM Note: maturase Location: 136257-136392 bp Feature: domain Description: GIIM Note: maturase Location: 13 6257-13 63 92 bp Feature: gene Location: 136542-136775 bp Feature: domain Description: PRK07201 Location: 136575-136716 bp Feature: domain Description: PRK07201 Location: 13 6575-13 6716 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10475 (23S rRNA pseudouridine(2604) synthase RluF), RVT-GII, GIIM (pfam08388), PRK07201 (SDR family oxidoreductase)