myRT

myRT report for GCA_002634895.1_ASM263489v1

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Seq: CP023870.1 Escherichia coli strain FDAARGOS_434 chromosome, complete genome (4897877 bp)
Overview 1 RT 1: 1366606-1370889 bp 2 RT 2: 1673821-1677192 bp 3 RT 3: 2870662-2877723 bp 4 RT 4: 2889254-2892893 bp 5 RT 5: 3347332-3351377 bp 6 RT 6: 4295158-4301576 bp Neighborhood of RT #1 [1366606, 1370897] RVT-GII RVT-GII GIIM YesM Neighborhood of RT #2 [1673821, 1677257] DUF1016_N PHA02517 RVT-GII GIIM PHA02517 Neighborhood of RT #3 [2870662, 2877788] RVT-Retrons Arm-DNA-bind_3 INT_P4_C PHA02517 RVT-GII GIIM PHA02517 Neighborhood of RT #4 [2889254, 2893060] InsE PHA02517 RVT-GII GIIM COG2085 Neighborhood of RT #5 [3347332, 3351442] QdoI PHA02517 RVT-GII GIIM PHA02517 Neighborhood of RT #6 [4295158, 4301641] phage_tail_N PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 1366606-1367511 bp Feature: gene Location: 1367649-1367840 bp Feature: gene Location: 1367997-1368536 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1368327-1368405 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 368327-1 368405 bp Feature: gene Location: 1368564-1369085 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1368570-1368852 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 368570-1 368852 bp Feature: domain Description: GIIM Note: maturase Location: 1368900-1369080 bp Feature: domain Description: GIIM Note: maturase Location: 1 368900-1 369080 bp Feature: gene Location: 1369407-1369595 bp Feature: gene Location: 1369635-1370897 bp Feature: domain Description: YesM Location: 1370148-1370889 bp Feature: domain Description: YesM Location: 1 3701 48-1 370889 bp Feature: gene Location: 1673821-1674060 bp Feature: domain Description: DUF1016_N Location: 1673878-1674055 bp Feature: domain Description: DUF1 01 6_N Location: 1 673878-1 674055 bp Feature: gene Location: 1674100-1674546 bp Feature: domain Description: PHA02517 Location: 1674103-1674544 bp Feature: domain Description: PHA0251 7 Location: 1 6741 03-1 674544 bp Feature: gene Location: 1674663-1676186 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1674936-1675668 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 674936-1 675668 bp Feature: domain Description: GIIM Note: maturase Location: 1675743-1675941 bp Feature: domain Description: GIIM Note: maturase Location: 1 675743-1 675941 bp Feature: gene Location: 1676140-1676565 bp Feature: gene Location: 1676778-1677257 bp Feature: domain Description: PHA02517 Location: 1676838-1677192 bp Feature: domain Description: PHA0251 7 Location: 1 676838-1 6771 92 bp Feature: gene Location: 2870662-2870811 bp Feature: gene Location: 2871112-2872098 bp Feature: gene Location: 2872100-2873032 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2872202-2872796 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2872202-2872796 bp Feature: gene Location: 2873058-2873303 bp Feature: gene Location: 2873487-2873789 bp Feature: domain Description: Arm-DNA-bind_3 Location: 2873496-2873748 bp Feature: domain Description: Arm-DNA-bind_3 Location: 2873496-2873748 bp Feature: gene Location: 2874440-2874628 bp Feature: domain Description: INT_P4_C Location: 2874443-2874590 bp Feature: domain Description: INT_P4_C Location: 2874443-2874590 bp Feature: gene Location: 2874631-2875077 bp Feature: domain Description: PHA02517 Location: 2874634-2875075 bp Feature: domain Description: PHA0251 7 Location: 2874634-2875075 bp Feature: gene Location: 2875194-2876717 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2875467-2876199 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2875467-28761 99 bp Feature: domain Description: GIIM Note: maturase Location: 2876274-2876472 bp Feature: domain Description: GIIM Note: maturase Location: 2876274-2876472 bp Feature: gene Location: 2876671-2877096 bp Feature: gene Location: 2877309-2877788 bp Feature: domain Description: PHA02517 Location: 2877369-2877723 bp Feature: domain Description: PHA0251 7 Location: 2877369-2877723 bp Feature: gene Location: 2889254-2889556 bp Feature: domain Description: InsE Location: 2889293-2889542 bp Feature: domain Description: InsE Location: 2889293-2889542 bp Feature: gene Location: 2889612-2890037 bp Feature: domain Description: PHA02517 Location: 2889636-2889972 bp Feature: domain Description: PHA0251 7 Location: 2889636-2889972 bp Feature: gene Location: 2890629-2892152 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2890902-2891634 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2890902-2891 634 bp Feature: domain Description: GIIM Note: maturase Location: 2891709-2891907 bp Feature: domain Description: GIIM Note: maturase Location: 2891 709-2891 907 bp Feature: gene Location: 2892347-2892481 bp Feature: gene Location: 2892647-2893060 bp Feature: domain Description: COG2085 Location: 2892746-2892893 bp Feature: domain Description: COG2085 Location: 2892746-2892893 bp Feature: gene Location: 3347332-3347682 bp Feature: domain Description: QdoI Location: 3347398-3347650 bp Feature: domain Description: QdoI Location: 3347398-3347650 bp Feature: gene Location: 3348285-3348731 bp Feature: domain Description: PHA02517 Location: 3348288-3348729 bp Feature: domain Description: PHA0251 7 Location: 3348288-3348729 bp Feature: gene Location: 3348848-3350371 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3349121-3349853 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33491 21 -3349853 bp Feature: domain Description: GIIM Note: maturase Location: 3349928-3350126 bp Feature: domain Description: GIIM Note: maturase Location: 3349928-33501 26 bp Feature: gene Location: 3350325-3350750 bp Feature: gene Location: 3350963-3351442 bp Feature: domain Description: PHA02517 Location: 3351023-3351377 bp Feature: domain Description: PHA0251 7 Location: 3351 023-3351 377 bp Feature: gene Location: 4295158-4298481 bp Feature: domain Description: phage_tail_N Location: 4295161-4295560 bp Feature: domain Description: phage_tail_N Location: 42951 61 -4295560 bp Feature: gene Location: 4298484-4298930 bp Feature: domain Description: PHA02517 Location: 4298487-4298928 bp Feature: domain Description: PHA0251 7 Location: 4298487-4298928 bp Feature: gene Location: 4299047-4300570 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4299320-4300052 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4299320-4300052 bp Feature: domain Description: GIIM Note: maturase Location: 4300127-4300325 bp Feature: domain Description: GIIM Note: maturase Location: 43001 27-4300325 bp Feature: gene Location: 4300524-4300949 bp Feature: gene Location: 4301162-4301641 bp Feature: domain Description: PHA02517 Location: 4301222-4301576 bp Feature: domain Description: PHA0251 7 Location: 4301 222-4301 576 bp Sorry, your browser does not 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Associated domains:myRT RVT-GII, GIIM (pfam08388), YesM (COG2972), DUF1016_N (pfam17761), PHA02517 (putative transposase OrfB; Reviewed), RVT-Retrons, Arm-DNA-bind_3 (pfam13356), INT_P4_C (cd00801), InsE (COG2963), COG2085 (Predicted dinucleotide-binding enzyme )
QdoI (COG1917), phage_tail_N (pfam08400)

Seq: CP023871.1 Escherichia coli strain FDAARGOS_434 plasmid unnamed1, complete sequence (149485 bp)
Overview 1 RT 1: 21809-31851 bp Neighborhood of RT #1 [21809, 31851] RVT_N RVT-GII GIIM HNHc AdoMet_MTases DUF3560 RVT_N RVT-GII GIIM HNHc Feature: gene Location: 21809-22378 bp Feature: gene Location: 22903-23466 bp Feature: gene Location: 24040-25707 bp Feature: domain Description: RVT_N Location: 24088-24325 bp Feature: domain Description: RVT_N Location: 2 4088-2 432 5 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24376-25018 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 4376-2 5018 bp Feature: domain Description: GIIM Note: maturase Location: 25069-25303 bp Feature: domain Description: GIIM Note: maturase Location: 2 5069-2 5303 bp Feature: domain Description: HNHc Note: nucleases Location: 25513-25672 bp Feature: domain Description: HNHc Note: nucleases Location: 2 5513-2 5672 bp Feature: gene Location: 26082-26645 bp Feature: domain Description: AdoMet_MTases Location: 26244-26547 bp Feature: domain Description: AdoMet_MTases Location: 2 62 44-2 6547 bp Feature: gene Location: 26693-28054 bp Feature: domain Description: DUF3560 Location: 26960-27317 bp Feature: domain Description: DUF3560 Location: 2 6960-2 7317 bp Feature: gene Location: 28599-28856 bp Feature: gene Location: 28887-29162 bp Feature: gene Location: 29736-30764 bp Feature: domain Description: RVT_N Location: 29784-30021 bp Feature: domain Description: RVT_N Location: 2 9784-3002 1 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30072-30714 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30072 -30714 bp Feature: gene Location: 30884-31402 bp Feature: domain Description: GIIM Note: maturase Location: 30890-30998 bp Feature: domain Description: GIIM Note: maturase Location: 30890-30998 bp Feature: domain Description: HNHc Note: nucleases Location: 31208-31367 bp Feature: domain Description: HNHc Note: nucleases Location: 312 08-31367 bp Feature: gene Location: 31657-31851 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), AdoMet_MTases (cl17173), DUF3560 (pfam12083)