myRT

myRT report for GCA_002683675.1_ASM268367v1

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Seq: NYTU01000079.1 Rheinheimera sp. isolate CPC6 MHASMcontig_710842, whole genome shotgun sequence (7424 bp)
Overview 1 RT 1: 1299-6010 bp Neighborhood of RT #1 [1299, 6010] AAA_15 AAA_15 TOPRIM_OLD RVT-Retrons COG4994 Feature: gene Location: 1299-2945 bp Feature: domain Description: AAA_15 Location: 1302-1440 bp Feature: domain Description: AAA_1 5 Location: 1 302-1 440 bp Feature: domain Description: AAA_15 Location: 1773-2304 bp Feature: domain Description: AAA_1 5 Location: 1 773-2304 bp Feature: domain Description: TOPRIM_OLD Location: 2457-2700 bp Feature: domain Description: TOPRIM_OLD Location: 2457-2700 bp Feature: gene Location: 3319-4296 bp Feature: gene Location: 4286-5218 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4385-4970 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4385-4970 bp Feature: gene Location: 5401-5772 bp Feature: domain Description: COG4994 Location: 5413-5755 bp Feature: domain Description: COG4994 Location: 541 3-5755 bp Feature: gene Location: 5792-6010 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_15 (pfam13175), TOPRIM_OLD (cd01026), RVT-Retrons, COG4994 (Uncharacterized protein )

Seq: NYTU01000084.1 Rheinheimera sp. isolate CPC6 MHASMcontig_711644, whole genome shotgun sequence (29081 bp)
Overview 1 RT 1: 5012-8549 bp Neighborhood of RT #1 [5012, 8549] InsE PRK13755 RVT-Retrons HTH_XRE Feature: gene Location: 5012-5380 bp Feature: domain Description: InsE Location: 5024-5330 bp Feature: domain Description: InsE Location: 502 4-5330 bp Feature: gene Location: 6309-6695 bp Feature: domain Description: PRK13755 Location: 6315-6684 bp Feature: domain Description: PRK13755 Location: 6315-6684 bp Feature: gene Location: 7026-7985 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 7176-7743 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 7176-7743 bp Feature: gene Location: 7951-8256 bp Feature: domain Description: HTH_XRE Location: 7963-8128 bp Feature: domain Description: HTH_XRE Location: 7963-812 8 bp Feature: gene Location: 8310-8549 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PRK13755 (organomercurial transporter MerC), RVT-Retrons, HTH_XRE (smart00530)

Seq: NYTU01000102.1 Rheinheimera sp. isolate CPC6 MHASMcontig_715236, whole genome shotgun sequence (10636 bp)
Overview 1 RT 1: 670-6336 bp Neighborhood of RT #1 [670, 6356] DUF1566 DUF1566 RVT-UG12 RMtype1_S_SonII-TRD2-CR2_like HsdS RMtype1_S_SonII-TRD2-CR2_like Feature: gene Location: 670-984 bp Feature: gene Location: 1281-2183 bp Feature: domain Description: DUF1566 Location: 1296-1545 bp Feature: domain Description: DUF1566 Location: 1296-1545 bp Feature: domain Description: DUF1566 Location: 1623-1959 bp Feature: domain Description: DUF1566 Location: 1623 -1959 bp Feature: gene Location: 2320-3909 bp Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 2716-3136 bp Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 2716-3 13 6 bp Feature: gene Location: 3916-4611 bp Feature: gene Location: 4608-6356 bp Feature: domain Description: RMtype1_S_SonII-TRD2-CR2_like Location: 4929-5475 bp Feature: domain Description: RMtype1_S_SonII-TRD2-CR2_like Location: 4929-5475 bp Feature: domain Description: HsdS Location: 5511-5733 bp Feature: domain Description: HsdS Location: 5511-573 3 bp Feature: domain Description: RMtype1_S_SonII-TRD2-CR2_like Location: 5778-6336 bp Feature: domain Description: RMtype1_S_SonII-TRD2-CR2_like Location: 5778-63 3 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1566 (pfam07603), RVT-UG12, RMtype1_S_SonII-TRD2-CR2_like (cd17246), HsdS (COG0732)

Seq: NYTU01000139.1 Rheinheimera sp. isolate CPC6 MHASMcontig_728053, whole genome shotgun sequence (13589 bp)
Overview 1 RT 1: 504-4130 bp Neighborhood of RT #1 [504, 4225] HTH_17 RVT-Retrons HTH_32 Tra5 HTH_Tnp_1 HTH_Tnp_1 Feature: gene Location: 504-713 bp Feature: domain Description: HTH_17 Location: 534-687 bp Feature: domain Description: HTH_17 Location: 534 -687 bp Feature: gene Location: 1097-1495 bp Feature: gene Location: 1705-2655 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1858-2404 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1858-24 04 bp Feature: gene Location: 2664-3722 bp Feature: domain Description: HTH_32 Location: 2766-2988 bp Feature: domain Description: HTH_32 Location: 2766-2988 bp Feature: domain Description: Tra5 Location: 3048-3549 bp Feature: domain Description: Tra5 Location: 304 8-354 9 bp Feature: gene Location: 3725-4225 bp Feature: domain Description: HTH_Tnp_1 Location: 3737-3902 bp Feature: domain Description: HTH_Tnp_1 Location: 3737-3902 bp Feature: domain Description: HTH_Tnp_1 Location: 3905-4130 bp Feature: domain Description: HTH_Tnp_1 Location: 3905-4 130 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_17 (pfam12728), RVT-Retrons, HTH_32 (pfam13565), Tra5 (COG2801), HTH_Tnp_1 (pfam01527)