myRT

myRT report for GCA_002683915.1_ASM268391v1

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Seq: NYUH01000078.1 Marinobacter sp. isolate CPC48 25590, whole genome shotgun sequence (22158 bp)
Overview 1 RT 1: 18130-22073 bp Neighborhood of RT #1 [18130, 22073] CCDC158 RVT-GII GIIM Feature: gene Location: 18130-19326 bp Feature: domain Description: CCDC158 Location: 18646-18874 bp Feature: domain Description: CCDC1 58 Location: 1 8646-1 8874 bp Feature: gene Location: 19476-19739 bp Feature: gene Location: 19808-21133 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20102-20720 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 201 02-20720 bp Feature: domain Description: GIIM Note: maturase Location: 20768-20993 bp Feature: domain Description: GIIM Note: maturase Location: 20768-20993 bp Feature: gene Location: 21249-22073 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CCDC158 (pfam15921), RVT-GII, GIIM (pfam08388)

Seq: NYUH01000087.1 Marinobacter sp. isolate CPC48 26131, whole genome shotgun sequence (8162 bp)
Overview 1 RT 1: 3-2175 bp Neighborhood of RT #1 [3, 2816] RVT-UG28 PRK09183 COG4584 Feature: gene Location: 3-356 bp Feature: RT Description: RVT-UG28 Note: UG28 RT Location: 294-357 bp Feature: RT Description: RVT-UG2 8 Note: UG2 8 RT Location: 2 94-357 bp Feature: gene Location: 551-1291 bp Feature: domain Description: PRK09183 Location: 566-1283 bp Feature: domain Description: PRK09183 Location: 566-12 83 bp Feature: gene Location: 1278-2816 bp Feature: domain Description: COG4584 Location: 1350-2175 bp Feature: domain Description: COG4584 Location: 1350-2 175 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG28, PRK09183 (transposase/IS protein; Provisional), COG4584 (Transposase )

Seq: NYUH01000104.1 Marinobacter sp. isolate CPC48 27203, whole genome shotgun sequence (13679 bp)
Overview 1 RT 1: 10679-13669 bp Neighborhood of RT #1 [10679, 13677] IS5 RVT-UG28 Feature: gene Location: 10679-11812 bp Feature: gene Location: 11985-12929 bp Feature: domain Description: IS5 Location: 12174-12903 bp Feature: domain Description: IS5 Location: 12174-12903 bp Feature: gene Location: 13057-13677 bp Feature: RT Description: RVT-UG28 Note: UG28 RT Location: 13345-13669 bp Feature: RT Description: RVT-UG28 Note: UG28 RT Location: 13 3 45-13 669 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IS5 (COG3039), RVT-UG28

Seq: NYUH01000175.1 Marinobacter sp. isolate CPC48 MHASMcontig_865770, whole genome shotgun sequence (6953 bp)
Overview 1 RT 1: 55-2466 bp Neighborhood of RT #1 [55, 2466] RVT-UG28 XerC Feature: gene Location: 55-678 bp Feature: RT Description: RVT-UG28 Note: UG28 RT Location: 346-670 bp Feature: RT Description: RVT-UG28 Note: UG28 RT Location: 34 6-670 bp Feature: gene Location: 957-2180 bp Feature: domain Description: XerC Location: 1242-2166 bp Feature: domain Description: XerC Location: 124 2-2166 bp Feature: gene Location: 2326-2466 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG28, XerC (COG4973)