myRT

myRT report for GCA_002684095.1_ASM268409v1

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Seq: NYUN01000016.1 Haliea sp. isolate CPC42 MHASMcontig_1032977, whole genome shotgun sequence (9329 bp)
Overview 1 RT 1: 234-9066 bp Neighborhood of RT #1 [234, 9080] COG0610 DUF45 RVT-UG3 RVT-UG8 PRK09692 Feature: gene Location: 234-3515 bp Feature: domain Description: COG0610 Location: 264-3129 bp Feature: domain Description: COG061 0 Location: 264-31 29 bp Feature: gene Location: 3519-4304 bp Feature: domain Description: DUF45 Location: 3648-4275 bp Feature: domain Description: DUF45 Location: 3648-4275 bp Feature: gene Location: 4332-5510 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 4617-5079 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 461 7-5079 bp Feature: gene Location: 5503-7398 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 6001-6439 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 6001 -6439 bp Feature: gene Location: 7557-7772 bp Feature: gene Location: 7821-9080 bp Feature: domain Description: PRK09692 Location: 7866-9066 bp Feature: domain Description: PRK09692 Location: 7866-9066 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG0610 (Type I site-specific restriction-modification system, R (restriction) subunit and related helicases ), DUF45 (pfam01863), RVT-UG3, RVT-UG8, PRK09692 (Integrase; provisional)

Seq: NYUN01000050.1 Haliea sp. isolate CPC42 MHASMcontig_1042784, whole genome shotgun sequence (15976 bp)
Overview 1 RT 1: 4670-7321 bp Neighborhood of RT #1 [4670, 7938] RVT-Retrons CSP_CDS NT_Rel-Spo_like Feature: gene Location: 4670-4867 bp Feature: gene Location: 4964-5155 bp Feature: gene Location: 5196-6386 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5346-5910 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5346-5910 bp Feature: gene Location: 6389-6616 bp Feature: domain Description: CSP_CDS Location: 6407-6587 bp Feature: domain Description: CSP_CDS Location: 6407-6587 bp Feature: gene Location: 6802-7938 bp Feature: domain Description: NT_Rel-Spo_like Location: 6952-7321 bp Feature: domain Description: NT_Rel-Spo_like Location: 6952 -732 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, CSP_CDS (cd04458), NT_Rel-Spo_like (cd05399)

Seq: NYUN01000107.1 Haliea sp. isolate CPC42 MHASMcontig_1060131, whole genome shotgun sequence (11000 bp)
Overview 1 RT 1: 4416-7297 bp Neighborhood of RT #1 [4416, 7419] RVT-GII GIIM PBP2_CysL_like LysR Feature: gene Location: 4416-4919 bp Feature: gene Location: 4803-4955 bp Feature: gene Location: 5129-6466 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5408-6029 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5408-6029 bp Feature: domain Description: GIIM Note: maturase Location: 6077-6296 bp Feature: domain Description: GIIM Note: maturase Location: 6077-6296 bp Feature: gene Location: 6552-6791 bp Feature: domain Description: PBP2_CysL_like Location: 6573-6771 bp Feature: domain Description: PBP2_CysL_like Location: 6573 -6771 bp Feature: gene Location: 6748-7419 bp Feature: domain Description: LysR Location: 6754-7297 bp Feature: domain Description: LysR Location: 6754-7297 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PBP2_CysL_like (cd08420), LysR (COG0583)