myRT

myRT report for GCA_002685395.1_ASM268539v1

Download annotations/find similar RTs

Seq: NYXE01000015.1 Rheinheimera sp. isolate CPC13 20249, whole genome shotgun sequence (16490 bp)
Overview 1 RT 1: 295-5750 bp Neighborhood of RT #1 [295, 5750] Big_9 Big_9 Kelch Y1_Tnp Bac_DnaA_C RVT-Retrons Feature: gene Location: 295-1833 bp Feature: domain Description: Big_9 Location: 394-616 bp Feature: domain Description: Big_9 Location: 394-61 6 bp Feature: domain Description: Big_9 Location: 634-892 bp Feature: domain Description: Big_9 Location: 634-892 bp Feature: domain Description: Kelch Location: 1093-1417 bp Feature: domain Description: Kelch Location: 1 093-1 41 7 bp Feature: gene Location: 2067-3041 bp Feature: domain Description: Y1_Tnp Location: 2100-2343 bp Feature: domain Description: Y1 _Tnp Location: 21 00-2343 bp Feature: domain Description: Bac_DnaA_C Location: 2754-3018 bp Feature: domain Description: Bac_DnaA_C Location: 2754-301 8 bp Feature: gene Location: 3263-4207 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3371-3959 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3371 -3959 bp Feature: gene Location: 4204-5181 bp Feature: gene Location: 5544-5750 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Y1_Tnp (pfam01797), Bac_DnaA_C (smart00760), Big_9 (pfam17963), Kelch (smart00612), RVT-Retrons

Seq: NYXE01000007.1 Rheinheimera sp. isolate CPC13 9859, whole genome shotgun sequence (27770 bp)
Overview 1 RT 1: 12152-19664 bp Neighborhood of RT #1 [12152, 19762] BID_2 BID_2 BID_2 BID_2 BID_2 BID_2 DUF1566 RVT-DGRs Avd_like PHA02517 Feature: gene Location: 12152-16066 bp Feature: domain Description: BID_2 Location: 12296-12536 bp Feature: domain Description: BID_2 Location: 12 2 96-12 536 bp Feature: domain Description: BID_2 Location: 13424-13646 bp Feature: domain Description: BID_2 Location: 1342 4-13646 bp Feature: domain Description: BID_2 Location: 14006-14237 bp Feature: domain Description: BID_2 Location: 14006-142 37 bp Feature: domain Description: BID_2 Location: 14321-14561 bp Feature: domain Description: BID_2 Location: 1432 1-14561 bp Feature: domain Description: BID_2 Location: 14591-14807 bp Feature: domain Description: BID_2 Location: 14591-14807 bp Feature: domain Description: BID_2 Location: 14921-15113 bp Feature: domain Description: BID_2 Location: 1492 1-15113 bp Feature: domain Description: DUF1566 Location: 15809-16055 bp Feature: domain Description: DUF1566 Location: 15809-16055 bp Feature: gene Location: 16153-16665 bp Feature: gene Location: 16955-18256 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 17165-17867 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 17165-17867 bp Feature: gene Location: 18209-18610 bp Feature: domain Description: Avd_like Location: 18263-18590 bp Feature: domain Description: Avd_like Location: 182 63-18590 bp Feature: gene Location: 18641-19762 bp Feature: domain Description: PHA02517 Location: 18872-19664 bp Feature: domain Description: PHA02 517 Location: 18872 -19664 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT BID_2 (smart00635), DUF1566 (pfam07603), RVT-DGRs, Avd_like (cd16376), PHA02517 (putative transposase OrfB; Reviewed)

Seq: NYXE01000056.1 Rheinheimera sp. isolate CPC13 MHASMcontig_19790, whole genome shotgun sequence (136522 bp)
Overview 1 RT 1: 3648-7918 bp Neighborhood of RT #1 [3648, 7918] AlpA RVT-Retrons YafY Feature: gene Location: 3648-3833 bp Feature: domain Description: AlpA Location: 3651-3825 bp Feature: domain Description: AlpA Location: 3 651-3 825 bp Feature: gene Location: 4024-5238 bp Feature: gene Location: 5417-6559 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5669-6278 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5669-6278 bp Feature: gene Location: 6678-7568 bp Feature: domain Description: YafY Location: 6756-7419 bp Feature: domain Description: YafY Location: 6756-7419 bp Feature: gene Location: 7640-7918 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AlpA (COG3311), RVT-Retrons, YafY (COG2378)

Seq: NYXE01000089.1 Rheinheimera sp. isolate CPC13 MHASMcontig_44508, whole genome shotgun sequence (9205 bp)
Overview 1 RT 1: 6550-8991 bp Neighborhood of RT #1 [6550, 9203] RVT-DGRs Feature: gene Location: 6550-8160 bp Feature: gene Location: 8291-8446 bp Feature: gene Location: 8703-9203 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 8715-8991 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 8715-8991 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: NYXE01000097.1 Rheinheimera sp. isolate CPC13 MHASMcontig_49307, whole genome shotgun sequence (8369 bp)
Overview 1 RT 1: 5527-8369 bp Neighborhood of RT #1 [5527, 8368] pfam03781 Avd_like RVT-DGRs Feature: gene Location: 5527-7077 bp Feature: domain Description: pfam03781 Location: 6304-6628 bp Feature: domain Description: pfam03781 Location: 6304-6628 bp Feature: gene Location: 7143-7499 bp Feature: domain Description: Avd_like Location: 7167-7467 bp Feature: domain Description: Avd_like Location: 7167-7467 bp Feature: gene Location: 7496-8368 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 7937-8369 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 7937-8369 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT pfam03781 (FGE-sulfatase;Sulfatase-modifying factor enzyme 1), Avd_like (cd16376), RVT-DGRs

Seq: NYXE01000100.1 Rheinheimera sp. isolate CPC13 MHASMcontig_52085, whole genome shotgun sequence (11291 bp)
Overview 1 RT 1: 6158-10937 bp Neighborhood of RT #1 [6158, 10975] TIGR02646 COG3950 RVT-Retrons Arm-DNA-bind_3 Phage_int_SAM_3 INT_P4_C Feature: gene Location: 6158-6913 bp Feature: domain Description: TIGR02646 Location: 6230-6743 bp Feature: domain Description: TIGR026 46 Location: 6 230-6 743 bp Feature: gene Location: 6897-8561 bp Feature: domain Description: COG3950 Location: 7122-8520 bp Feature: domain Description: COG3950 Location: 7122-8520 bp Feature: gene Location: 8509-9450 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 8608-9205 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 86 08-9205 bp Feature: gene Location: 9695-10975 bp Feature: domain Description: Arm-DNA-bind_3 Location: 9719-9995 bp Feature: domain Description: Arm-DNA-bind_3 Location: 9719-9995 bp Feature: domain Description: Phage_int_SAM_3 Location: 10109-10178 bp Feature: domain Description: Phage_int_SAM_3 Location: 10109-10178 bp Feature: domain Description: INT_P4_C Location: 10370-10937 bp Feature: domain Description: INT_P4_C Location: 10370-10937 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TIGR02646 (TIGR02646 family protein), COG3950 (Predicted ATP-binding protein involved in virulence ), RVT-Retrons, Arm-DNA-bind_3 (pfam13356), Phage_int_SAM_3 (pfam14659), INT_P4_C (cd00801)

Seq: NYXE01000110.1 Rheinheimera sp. isolate CPC13 MHASMcontig_65170, whole genome shotgun sequence (23710 bp)
Overview 1 RT 1: 2050-5993 bp Neighborhood of RT #1 [2050, 6010] Mrr HsdM_N RVT_N RVT-GII GIIM TnpB_IS66 Feature: gene Location: 2050-2973 bp Feature: domain Description: Mrr Location: 2053-2965 bp Feature: domain Description: Mrr Location: 2053-2965 bp Feature: gene Location: 3031-3225 bp Feature: domain Description: HsdM_N Location: 3058-3166 bp Feature: domain Description: HsdM_N Location: 3058-3166 bp Feature: gene Location: 3758-5272 bp Feature: RT Description: RVT_N Location: 3815-4058 bp Feature: RT Description: RVT_N Location: 3815-4058 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4103-4760 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4103-47 60 bp Feature: domain Description: GIIM Note: maturase Location: 4820-5045 bp Feature: domain Description: GIIM Note: maturase Location: 4820-5045 bp Feature: gene Location: 5332-5496 bp Feature: gene Location: 5846-6010 bp Feature: domain Description: TnpB_IS66 Location: 5849-5993 bp Feature: domain Description: TnpB_IS66 Location: 5849-5993 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Mrr (COG1715), HsdM_N (pfam12161), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), TnpB_IS66 (pfam05717)