myRT

myRT report for GCA_002685535.1_ASM268553v1

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Seq: NYXK01000080.1 Deltaproteobacteria bacterium isolate CPC1 66891, whole genome shotgun sequence (168927 bp)
Overview 1 RT 1: 28117-31247 bp Neighborhood of RT #1 [28117, 31247] RVT-UNC Feature: gene Location: 28117-28314 bp Feature: gene Location: 28554-28964 bp Feature: gene Location: 29402-30574 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 30341-30542 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 30341 -30542 bp Feature: gene Location: 30587-30763 bp Feature: gene Location: 30966-31247 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG4/RVT-UG25/RVT-DGRs(RVT-UNC)

Seq: NYXK01000161.1 Deltaproteobacteria bacterium isolate CPC1 68963, whole genome shotgun sequence (6875 bp)
Overview 1 RT 1: 367-5914 bp Neighborhood of RT #1 [367, 5958] RVT-UNC RNase_HI_RT_Ty3 Integrase_H2C2 rve retropepsin_like zf-CCHC Feature: gene Location: 367-1434 bp Feature: gene Location: 1975-5214 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 2647-2830 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 2 647-2 830 bp Feature: domain Description: RNase_HI_RT_Ty3 Location: 3139-3520 bp Feature: domain Description: RNase_HI_RT_Ty3 Location: 3139-352 0 bp Feature: domain Description: Integrase_H2C2 Location: 4090-4261 bp Feature: domain Description: Integrase_H2 C2 Location: 4090-42 61 bp Feature: domain Description: rve Location: 4318-4666 bp Feature: domain Description: rve Location: 4318-4666 bp Feature: gene Location: 5281-5559 bp Feature: domain Description: retropepsin_like Location: 5302-5557 bp Feature: domain Description: retropepsin_like Location: 5302 -5557 bp Feature: gene Location: 5617-5958 bp Feature: domain Description: zf-CCHC Location: 5866-5914 bp Feature: domain Description: zf-CCHC Location: 5866-5914 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG17/RVT-DGRs/RVT-GII/RVT-UG11(RVT-UNC), RNase_HI_RT_Ty3 (cd09274), Integrase_H2C2 (pfam17921), rve (pfam00665), retropepsin_like (cd00303), zf-CCHC (pfam00098)

Seq: NYXK01000224.1 Deltaproteobacteria bacterium isolate CPC1 MHASMcontig_540077, whole genome shotgun sequence (10308 bp)
Overview 1 RT 1: 8133-10130 bp Neighborhood of RT #1 [8133, 10216] retropepsin_like RVT-UNC Feature: gene Location: 8133-8306 bp Feature: gene Location: 8978-9229 bp Feature: domain Description: retropepsin_like Location: 8981-9224 bp Feature: domain Description: retropepsin_like Location: 8981-9224 bp Feature: gene Location: 9695-10216 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 9965-10130 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 9965-1013 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT retropepsin_like (cd00303), RVT-DGRs/RVT-GII/RVT-UG17/RVT-UG26(RVT-UNC)

Seq: NYXK01000237.1 Deltaproteobacteria bacterium isolate CPC1 MHASMcontig_849489, whole genome shotgun sequence (9044 bp)
Overview 1 RT 1: 3-7611 bp Neighborhood of RT #1 [3, 7611] AIR1 Exo_endo_phos_2 RVT-CRISPR-like Rnase_HI_RT_non_LTR Feature: gene Location: 3-395 bp Feature: gene Location: 662-2152 bp Feature: domain Description: AIR1 Location: 1937-2093 bp Feature: domain Description: AIR1 Location: 1937-2093 bp Feature: gene Location: 2163-5924 bp Feature: domain Description: Exo_endo_phos_2 Location: 2466-2847 bp Feature: domain Description: Exo_endo_phos_2 Location: 24 66-284 7 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 3699-4335 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 3699-4 335 bp Feature: domain Description: Rnase_HI_RT_non_LTR Location: 5010-5397 bp Feature: domain Description: Rnase_HI_RT_non_LTR Location: 5010-5397 bp Feature: gene Location: 6338-7063 bp Feature: gene Location: 7471-7611 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AIR1 (COG5082), Exo_endo_phos_2 (pfam14529), RVT-CRISPR, Rnase_HI_RT_non_LTR (cd09276)