myRT

myRT report for GCA_002690925.1_ASM269092v1

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Seq: NZGD01000072.1 Rhodopirellula sp. isolate MED697 MHASMcontig_108529, whole genome shotgun sequence (28158 bp)
Overview 1 RT 1: 135-7808 bp Neighborhood of RT #1 [135, 7837] InsE RVT-GII HSD10-like_SDR_c HSD10-like_SDR_c RVT-GII GIIM SCAD_SBCAD zf-ISL3 HTH_Tnp_ISL3 DDE_Tnp_ISL3 Feature: gene Location: 135-512 bp Feature: domain Description: InsE Location: 168-336 bp Feature: domain Description: InsE Location: 1 68-336 bp Feature: gene Location: 942-2441 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1356-2046 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 356-2046 bp Feature: gene Location: 2538-2882 bp Feature: domain Description: HSD10-like_SDR_c Location: 2541-2877 bp Feature: domain Description: HSD1 0-like_SDR_c Location: 2541 -2877 bp Feature: gene Location: 2879-3133 bp Feature: domain Description: HSD10-like_SDR_c Location: 2882-3131 bp Feature: domain Description: HSD1 0-like_SDR_c Location: 2882-31 31 bp Feature: gene Location: 4181-4375 bp Feature: gene Location: 4608-4754 bp Feature: gene Location: 4979-6247 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5192-5810 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51 92-581 0 bp Feature: domain Description: GIIM Note: maturase Location: 5861-6083 bp Feature: domain Description: GIIM Note: maturase Location: 5861 -6083 bp Feature: gene Location: 6348-6635 bp Feature: domain Description: SCAD_SBCAD Location: 6354-6576 bp Feature: domain Description: SCAD_SBCAD Location: 6354-6576 bp Feature: gene Location: 6632-7837 bp Feature: domain Description: zf-ISL3 Location: 6746-6878 bp Feature: domain Description: zf-ISL3 Location: 6746-6878 bp Feature: domain Description: HTH_Tnp_ISL3 Location: 6893-7040 bp Feature: domain Description: HTH_Tnp_ISL3 Location: 6893-7040 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 7088-7808 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 7088-7808 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), RVT-GII, HSD10-like_SDR_c (cd05371), GIIM (pfam08388), SCAD_SBCAD (cd01158), zf-ISL3 (pfam14690), HTH_Tnp_ISL3 (pfam13542), DDE_Tnp_ISL3 (pfam01610)

Seq: NZGD01000157.1 Rhodopirellula sp. isolate MED697 MHASMcontig_137621, whole genome shotgun sequence (12445 bp)
Overview 1 RT 1: 2-12296 bp Neighborhood of RT #1 [2, 12296] Peptidase_C48 L1-EN RVT-UNC Rnase_HI_RT_non_LTR Feature: gene Location: 2-133 bp Feature: gene Location: 253-9327 bp Feature: domain Description: Peptidase_C48 Location: 1561-1981 bp Feature: domain Description: Peptidase_C48 Location: 1561-1981 bp Feature: domain Description: L1-EN Location: 2446-3232 bp Feature: domain Description: L1-EN Location: 2 446-32 32 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 4741-5248 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 4741-52 48 bp Feature: domain Description: Rnase_HI_RT_non_LTR Location: 7918-8320 bp Feature: domain Description: Rnase_HI_RT_non_LTR Location: 7918-832 0 bp Feature: gene Location: 9381-12296 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Peptidase_C48 (pfam02902), L1-EN (cd09076), RVT-DGRs/RVT-GII/RVT-UG23/RVT-UG5(RVT-UNC), Rnase_HI_RT_non_LTR (cd09276)

Seq: NZGD01000235.1 Rhodopirellula sp. isolate MED697 MHASMcontig_164175, whole genome shotgun sequence (32264 bp)
Overview 1 RT 1: 28490-32240 bp Neighborhood of RT #1 [28490, 32240] PilJ RVT-UG3 Feature: gene Location: 28490-29167 bp Feature: domain Description: PilJ Location: 28673-28970 bp Feature: domain Description: PilJ Location: 28673 -28970 bp Feature: gene Location: 29761-30051 bp Feature: gene Location: 30211-31482 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 30490-31027 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 3 0490-3 1027 bp Feature: gene Location: 31670-31843 bp Feature: gene Location: 31854-32240 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PilJ (pfam13675), RVT-UG3

Seq: NZGD01000278.1 Rhodopirellula sp. isolate MED697 MHASMcontig_179503, whole genome shotgun sequence (30936 bp)
Overview 1 RT 1: 297-2889 bp Neighborhood of RT #1 [297, 2889] RVT-UG4 Feature: gene Location: 297-1088 bp Feature: gene Location: 1184-2224 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 1601-2027 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 1601-2027 bp Feature: gene Location: 2300-2470 bp Feature: gene Location: 2755-2889 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG4