myRT

myRT report for GCA_002696005.1_ASM269600v1

Download annotations/find similar RTs

Seq: NZQS01000016.1 Idiomarina sp. isolate EAC55 145138, whole genome shotgun sequence (53493 bp)
Overview 1 RT 1: 46938-49819 bp Neighborhood of RT #1 [46938, 49941] RVT-GII GIIM PBP2_CysL_like LysR Feature: gene Location: 46938-47441 bp Feature: gene Location: 47325-47477 bp Feature: gene Location: 47651-48988 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 47930-48551 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 47930-48551 bp Feature: domain Description: GIIM Note: maturase Location: 48599-48818 bp Feature: domain Description: GIIM Note: maturase Location: 48599-4881 8 bp Feature: gene Location: 49074-49313 bp Feature: domain Description: PBP2_CysL_like Location: 49095-49293 bp Feature: domain Description: PBP2_CysL_like Location: 49095-49293 bp Feature: gene Location: 49270-49941 bp Feature: domain Description: LysR Location: 49276-49819 bp Feature: domain Description: LysR Location: 49276-4981 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PBP2_CysL_like (cd08420), LysR (COG0583)

Seq: NZQS01000034.1 Idiomarina sp. isolate EAC55 146381, whole genome shotgun sequence (252049 bp)
Overview 1 RT 1: 234-9066 bp Neighborhood of RT #1 [234, 9080] COG0610 DUF45 RVT-UG3 RVT-UG8 PRK09692 Feature: gene Location: 234-3515 bp Feature: domain Description: COG0610 Location: 264-3129 bp Feature: domain Description: COG0610 Location: 2 64-312 9 bp Feature: gene Location: 3519-4304 bp Feature: domain Description: DUF45 Location: 3648-4275 bp Feature: domain Description: DUF45 Location: 3648-42 75 bp Feature: gene Location: 4332-5510 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 4617-5079 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 4617-5079 bp Feature: gene Location: 5503-7398 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 6001-6439 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 6001-6439 bp Feature: gene Location: 7557-7772 bp Feature: gene Location: 7821-9080 bp Feature: domain Description: PRK09692 Location: 7866-9066 bp Feature: domain Description: PRK09692 Location: 7866-9066 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG0610 (Type I site-specific restriction-modification system, R (restriction) subunit and related helicases ), DUF45 (pfam01863), RVT-UG3, RVT-UG8, PRK09692 (Integrase; provisional)

Seq: NZQS01000003.1 Idiomarina sp. isolate EAC55 MHASMcontig_880076, whole genome shotgun sequence (12719 bp)
Overview 1 RT 1: 2888-8766 bp Neighborhood of RT #1 [2888, 8789] RVT-UG8 PepSY_TM Feature: gene Location: 2888-3064 bp Feature: gene Location: 3105-3977 bp Feature: gene Location: 5397-7331 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 5892-6333 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 5892-63 3 3 bp Feature: gene Location: 7335-7574 bp Feature: gene Location: 7581-8789 bp Feature: domain Description: PepSY_TM Location: 7611-8766 bp Feature: domain Description: PepSY_TM Location: 7611-8766 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG8, PepSY_TM (pfam03929)