myRT

myRT report for GCA_002699025.1_ASM269902v1

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Seq: PABA01000237.1 Sandaracinus sp. isolate NAT131 113418, whole genome shotgun sequence (34688 bp)
Overview 1 RT 1: 28006-34594 bp Neighborhood of RT #1 [28006, 34686] TPR TPR TPR TPR TPR TPR TPR TPR TPR TPR RVT-GII Feature: gene Location: 28006-31716 bp Feature: domain Description: TPR Location: 28348-28753 bp Feature: domain Description: TPR Location: 28348-28753 bp Feature: domain Description: TPR Location: 28789-29005 bp Feature: domain Description: TPR Location: 28789-29005 bp Feature: domain Description: TPR Location: 29047-29251 bp Feature: domain Description: TPR Location: 29047-29251 bp Feature: domain Description: TPR Location: 29491-29743 bp Feature: domain Description: TPR Location: 29491 -29743 bp Feature: domain Description: TPR Location: 29956-30316 bp Feature: domain Description: TPR Location: 29956-3031 6 bp Feature: domain Description: TPR Location: 30493-30952 bp Feature: domain Description: TPR Location: 30493-30952 bp Feature: gene Location: 31716-33212 bp Feature: domain Description: TPR Location: 31953-32109 bp Feature: domain Description: TPR Location: 31 953-321 09 bp Feature: domain Description: TPR Location: 32169-32415 bp Feature: domain Description: TPR Location: 321 69-3241 5 bp Feature: domain Description: TPR Location: 32445-32625 bp Feature: domain Description: TPR Location: 32445-32625 bp Feature: domain Description: TPR Location: 32646-32913 bp Feature: domain Description: TPR Location: 32646-3291 3 bp Feature: gene Location: 33820-34686 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34012-34594 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3401 2-34594 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TPR (smart00028), RVT-GII

Seq: PABA01000104.1 Sandaracinus sp. isolate NAT131 MHASMcontig_910796, whole genome shotgun sequence (15225 bp)
Overview 1 RT 1: 594-4571 bp Neighborhood of RT #1 [594, 5050] 23S_rRNA_IVP_like RVT-Retrons COG2343 COG4402 Feature: gene Location: 594-959 bp Feature: domain Description: 23S_rRNA_IVP_like Location: 618-933 bp Feature: domain Description: 2 3S_rRNA_IVP_like Location: 618-933 bp Feature: gene Location: 1392-3068 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2223-2835 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2 2 2 3-2 835 bp Feature: gene Location: 3093-3377 bp Feature: domain Description: COG2343 Location: 3099-3372 bp Feature: domain Description: COG2 343 Location: 3099-3372 bp Feature: gene Location: 3407-5050 bp Feature: domain Description: COG4402 Location: 3479-4571 bp Feature: domain Description: COG4402 Location: 3479-4571 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, COG2343 (Uncharacterized conserved protein, DUF427 family ), COG4402 (Uncharacterized protein ), 23S_rRNA_IVP_like (cd16377)

Seq: PABA01000151.1 Sandaracinus sp. isolate NAT131 MHASMcontig_941578, whole genome shotgun sequence (102255 bp)
Overview 1 RT 1: 26253-34589 bp Neighborhood of RT #1 [26253, 34589] COG3564 DUF676 RVT-Retrons SWIM Feature: gene Location: 26253-26690 bp Feature: domain Description: COG3564 Location: 26364-26682 bp Feature: domain Description: COG3 564 Location: 263 64-26682 bp Feature: gene Location: 26954-27940 bp Feature: domain Description: DUF676 Location: 27173-27494 bp Feature: domain Description: DUF676 Location: 27173 -27494 bp Feature: gene Location: 28272-29660 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 28818-29433 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 28818-2943 3 bp Feature: gene Location: 30307-31980 bp Feature: domain Description: SWIM Location: 31864-31942 bp Feature: domain Description: SWIM Location: 3 1864-3 1942 bp Feature: gene Location: 31977-34589 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3564 (Uncharacterized conserved protein, DUF779 family ), DUF676 (pfam05057), RVT-Retrons, SWIM (pfam04434)

Seq: PABA01000191.1 Sandaracinus sp. isolate NAT131 MHASMcontig_967071, whole genome shotgun sequence (21357 bp)
Overview 1 RT 1: 9036-21071 bp Neighborhood of RT #1 [9036, 21145] WD40 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT HEAT_2 HEAT_2 RVT-Retrons PEGA Feature: gene Location: 9036-15488 bp Feature: domain Description: WD40 Location: 9222-9855 bp Feature: domain Description: WD4 0 Location: 9222-9855 bp Feature: domain Description: HEAT_2 Location: 10014-10173 bp Feature: domain Description: HEAT_2 Location: 10014 -10173 bp Feature: domain Description: HEAT_2 Location: 10311-10548 bp Feature: domain Description: HEAT_2 Location: 10311-1054 8 bp Feature: domain Description: HEAT_2 Location: 10779-11049 bp Feature: domain Description: HEAT_2 Location: 10779-1104 9 bp Feature: domain Description: HEAT_2 Location: 11217-11373 bp Feature: domain Description: HEAT_2 Location: 11217-11373 bp Feature: domain Description: HEAT Location: 11646-11715 bp Feature: domain Description: HEAT Location: 1164 6-11715 bp Feature: domain Description: HEAT_2 Location: 11874-12060 bp Feature: domain Description: HEAT_2 Location: 11874 -12060 bp Feature: domain Description: HEAT_2 Location: 12819-13023 bp Feature: domain Description: HEAT_2 Location: 12819-13023 bp Feature: domain Description: HEAT_2 Location: 13185-13428 bp Feature: domain Description: HEAT_2 Location: 13185-134 28 bp Feature: domain Description: HEAT_2 Location: 13482-13656 bp Feature: domain Description: HEAT_2 Location: 134 82-13656 bp Feature: domain Description: HEAT_2 Location: 13755-13935 bp Feature: domain Description: HEAT_2 Location: 13755-13935 bp Feature: domain Description: HEAT Location: 13959-14127 bp Feature: domain Description: HEAT Location: 13959-14 127 bp Feature: domain Description: HEAT_2 Location: 14271-14499 bp Feature: domain Description: HEAT_2 Location: 14 271-14 4 99 bp Feature: domain Description: HEAT_2 Location: 15273-15450 bp Feature: domain Description: HEAT_2 Location: 15273-154 50 bp Feature: gene Location: 15485-17314 bp Feature: gene Location: 17745-19073 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 18237-18852 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 18237-18852 bp Feature: gene Location: 19262-20098 bp Feature: gene Location: 20243-21145 bp Feature: domain Description: PEGA Location: 20966-21071 bp Feature: domain Description: PEGA Location: 20966-21071 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, PEGA (pfam08308), WD40 (smart00320), HEAT_2 (pfam13646), HEAT (sd00044)