myRT

myRT report for GCA_002699785.1_ASM269978v1

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Seq: LKBU01000001.1 Pseudomonas sp. ICMP 564 scaffold1, whole genome shotgun sequence (969197 bp)
Overview 1 RT 1: 717134-723931 bp Neighborhood of RT #1 [717134, 724017] RVT-UG1 SuhB Feature: gene Location: 717134-717325 bp Feature: gene Location: 717931-718170 bp Feature: gene Location: 718571-722401 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 719186-719675 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 71 91 86-71 9675 bp Feature: gene Location: 722640-723110 bp Feature: gene Location: 723193-724017 bp Feature: domain Description: SuhB Location: 723319-723931 bp Feature: domain Description: SuhB Location: 72331 9-723931 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG1, SuhB (COG0483)

Seq: LKBU01000004.1 Pseudomonas sp. ICMP 564 scaffold12, whole genome shotgun sequence (140609 bp)
Overview 1 RT 1: 136979-140436 bp Neighborhood of RT #1 [136979, 140459] OprD IS5 RVT-GII GIIM IS5 Feature: gene Location: 136979-137470 bp Feature: domain Description: OprD Location: 136988-137462 bp Feature: domain Description: OprD Location: 136988-137462 bp Feature: gene Location: 137629-138087 bp Feature: domain Description: IS5 Location: 137632-138061 bp Feature: domain Description: IS5 Location: 137632 -138061 bp Feature: gene Location: 138159-139427 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 138372-139029 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 138372 -13902 9 bp Feature: domain Description: GIIM Note: maturase Location: 139107-139329 bp Feature: domain Description: GIIM Note: maturase Location: 139107-13932 9 bp Feature: gene Location: 139920-140459 bp Feature: domain Description: IS5 Location: 140109-140436 bp Feature: domain Description: IS5 Location: 140109-140436 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT OprD (pfam03573), IS5 (COG3039), RVT-GII, GIIM (pfam08388)

Seq: LKBU01000023.1 Pseudomonas sp. ICMP 564 scaffold3, whole genome shotgun sequence (722304 bp)
Overview 1 RT 1: 575814-578451 bp Neighborhood of RT #1 [575814, 578451] RVT-GII GIIM Feature: gene Location: 575814-576038 bp Feature: gene Location: 576053-576259 bp Feature: gene Location: 576438-577859 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 576795-577410 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 576795-577410 bp Feature: domain Description: GIIM Note: maturase Location: 577467-577692 bp Feature: domain Description: GIIM Note: maturase Location: 577467-577692 bp Feature: gene Location: 577994-578179 bp Feature: gene Location: 578323-578451 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: LKBU01000063.1 Pseudomonas sp. ICMP 564 scaffold8, whole genome shotgun sequence (220344 bp)
Overview 1 RT 1: 55775-61239 bp Neighborhood of RT #1 [55775, 61268] ACR3 DDE_Tnp_IS66_C RVT_N RVT-GII GIIM LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 TnpB_IS66 Feature: gene Location: 55775-56959 bp Feature: domain Description: ACR3 Location: 55991-56939 bp Feature: domain Description: ACR3 Location: 55991-56939 bp Feature: gene Location: 56998-57132 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 57004-57115 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 57004 -57115 bp Feature: gene Location: 57324-58985 bp Feature: domain Description: RVT_N Location: 57369-57612 bp Feature: domain Description: RVT_N Location: 57369-57612 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 57657-58293 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 57657-58293 bp Feature: domain Description: GIIM Note: maturase Location: 58350-58578 bp Feature: domain Description: GIIM Note: maturase Location: 58350-58578 bp Feature: gene Location: 59543-60871 bp Feature: domain Description: LZ_Tnp_IS66 Location: 59675-59882 bp Feature: domain Description: LZ_Tnp_IS66 Location: 59675-59882 bp Feature: domain Description: zf-IS66 Location: 59921-60035 bp Feature: domain Description: zf-IS66 Location: 59921-60035 bp Feature: domain Description: DDE_Tnp_IS66 Location: 60077-60851 bp Feature: domain Description: DDE_Tnp_IS66 Location: 60077-60851 bp Feature: gene Location: 60933-61268 bp Feature: domain Description: TnpB_IS66 Location: 60951-61239 bp Feature: domain Description: TnpB_IS66 Location: 60951-61239 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ACR3 (COG0798), DDE_Tnp_IS66_C (pfam13817), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), TnpB_IS66 (pfam05717)