myRT

myRT report for GCA_002699915.1_ASM269991v1

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Seq: LKBY01000001.1 Pseudomonas sp. ICMP 8385 scaffold1, whole genome shotgun sequence (580644 bp)
Overview 1 RT 1: 496199-503888 bp Neighborhood of RT #1 [496199, 503905] groES groEL RVT_N RVT-GII GIIM HNHc LTA_synthase OmpR Feature: gene Location: 496199-496495 bp Feature: domain Description: groES Location: 496208-496490 bp Feature: domain Description: groES Location: 496208-496490 bp Feature: gene Location: 496545-498197 bp Feature: domain Description: groEL Location: 496551-498171 bp Feature: domain Description: groEL Location: 496551 -4981 71 bp Feature: gene Location: 499232-500923 bp Feature: domain Description: RVT_N Location: 499286-499526 bp Feature: domain Description: RVT_N Location: 499286-499526 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 499574-500219 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 499574-50021 9 bp Feature: domain Description: GIIM Note: maturase Location: 500270-500504 bp Feature: domain Description: GIIM Note: maturase Location: 500270-500504 bp Feature: domain Description: HNHc Note: nucleases Location: 500723-500876 bp Feature: domain Description: HNHc Note: nucleases Location: 500723-500876 bp Feature: gene Location: 501083-503020 bp Feature: domain Description: LTA_synthase Location: 501911-502721 bp Feature: domain Description: LTA_synthase Location: 501 91 1 -502721 bp Feature: gene Location: 503222-503905 bp Feature: domain Description: OmpR Location: 503225-503888 bp Feature: domain Description: OmpR Location: 503225-503888 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT groES (PRK14533), groEL (PRK12852), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), LTA_synthase (cd16015), OmpR (COG0745)

Seq: LKBY01000155.1 Pseudomonas sp. ICMP 8385 scaffold78, whole genome shotgun sequence (8807 bp)
Overview 1 RT 1: 3-7996 bp Neighborhood of RT #1 [3, 7996] benzo_1_2_benA benzo_1_2_benA RVT-GII Resolvase Resolvase Recombinase Zn_ribbon_recom Ser_Recombinase Recombinase Zn_ribbon_recom HTH_17 HTH_17 RVT-GII AraC_binding_2 HTH_18 Feature: gene Location: 3-581 bp Feature: domain Description: benzo_1_2_benA Location: 27-186 bp Feature: domain Description: benzo_1_2 _benA Location: 2 7-186 bp Feature: domain Description: benzo_1_2_benA Location: 189-582 bp Feature: domain Description: benzo_1_2 _benA Location: 189-582 bp Feature: gene Location: 750-968 bp Feature: gene Location: 976-1431 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1006-1192 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1006-1192 bp Feature: gene Location: 1822-2109 bp Feature: domain Description: Resolvase Location: 1843-2074 bp Feature: domain Description: Resolvase Location: 1843-2 074 bp Feature: gene Location: 2109-3788 bp Feature: domain Description: Resolvase Location: 2112-2280 bp Feature: domain Description: Resolvase Location: 2 112 -2 2 80 bp Feature: domain Description: Recombinase Location: 2376-2733 bp Feature: domain Description: Recombinase Location: 2 376-2 733 bp Feature: domain Description: Zn_ribbon_recom Location: 2775-2979 bp Feature: domain Description: Zn_ribbon_recom Location: 2 775-2 979 bp Feature: gene Location: 4120-4698 bp Feature: domain Description: Ser_Recombinase Location: 4177-4549 bp Feature: domain Description: Ser_Recombinase Location: 4177-4549 bp Feature: gene Location: 4695-6326 bp Feature: domain Description: Recombinase Location: 4704-5052 bp Feature: domain Description: Recombinase Location: 4704-5052 bp Feature: domain Description: Zn_ribbon_recom Location: 5109-5277 bp Feature: domain Description: Zn_ribbon_recom Location: 5109-52 77 bp Feature: domain Description: HTH_17 Location: 5988-6111 bp Feature: domain Description: HTH_17 Location: 5988-6111 bp Feature: domain Description: HTH_17 Location: 6171-6285 bp Feature: domain Description: HTH_17 Location: 6171-62 85 bp Feature: gene Location: 6388-6675 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6559-6661 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6559-6661 bp Feature: gene Location: 6737-7732 bp Feature: domain Description: AraC_binding_2 Location: 6803-7259 bp Feature: domain Description: AraC_binding_2 Location: 6803-72 59 bp Feature: domain Description: HTH_18 Location: 7436-7682 bp Feature: domain Description: HTH_18 Location: 7436-7682 bp Feature: gene Location: 7862-7996 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT benzo_1_2_benA (TIGR03229), RVT-GII, Resolvase (smart00857), Recombinase (pfam07508), Zn_ribbon_recom (pfam13408), Ser_Recombinase (cl02788), HTH_17 (pfam12728), AraC_binding_2 (pfam14525), HTH_18 (pfam12833)

Seq: LKBY01000162.1 Pseudomonas sp. ICMP 8385 scaffold84, whole genome shotgun sequence (6415 bp)
Overview 1 RT 1: 1238-5112 bp Neighborhood of RT #1 [1238, 5189] LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 DDE_Tnp_IS66_C RVT-GII GIIM HNHc Feature: gene Location: 1238-1855 bp Feature: gene Location: 1912-3441 bp Feature: domain Description: LZ_Tnp_IS66 Location: 2032-2251 bp Feature: domain Description: LZ_Tnp_IS66 Location: 203 2-2251 bp Feature: domain Description: zf-IS66 Location: 2272-2398 bp Feature: domain Description: zf-IS66 Location: 2272-23 98 bp Feature: domain Description: DDE_Tnp_IS66 Location: 2440-3283 bp Feature: domain Description: DDE_Tnp_IS66 Location: 2440-3 283 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 3304-3415 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 3 3 04-3 415 bp Feature: gene Location: 3735-5189 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3783-4434 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 783 -443 4 bp Feature: domain Description: GIIM Note: maturase Location: 4509-4740 bp Feature: domain Description: GIIM Note: maturase Location: 4509-4740 bp Feature: domain Description: HNHc Note: nucleases Location: 4962-5112 bp Feature: domain Description: HNHc Note: nucleases Location: 4962-5112 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), RVT-GII, GIIM (pfam08388), HNHc (smart00507)