myRT

myRT report for GCA_002700005.1_ASM270000v1

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Seq: PDUU01000002.1 Tenacibaculum sp. 4G03 6_S6_L001_R1_001__paired__contig_2, whole genome shotgun sequence (292090 bp)
Overview 1 RT 1: 230828-236979 bp Neighborhood of RT #1 [230828, 236979] AmpC AmpC DUF3471 RVT-UG14 Feature: gene Location: 230828-232030 bp Feature: domain Description: AmpC Location: 230939-231944 bp Feature: domain Description: AmpC Location: 230939-231 944 bp Feature: gene Location: 232231-233799 bp Feature: domain Description: AmpC Location: 232255-233326 bp Feature: domain Description: AmpC Location: 232255-233326 bp Feature: domain Description: DUF3471 Location: 233494-233785 bp Feature: domain Description: DUF3471 Location: 233494-233785 bp Feature: gene Location: 233866-235446 bp Feature: RT Description: RVT-UG14 Note: UG14 RT Location: 234328-234817 bp Feature: RT Description: RVT-UG1 4 Note: UG1 4 RT Location: 234328-23481 7 bp Feature: gene Location: 235621-236292 bp Feature: gene Location: 236458-236979 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AmpC (COG1680), DUF3471 (pfam11954), RVT-UG14

Seq: PDUU01000008.1 Tenacibaculum sp. 4G03 6_S6_L001_R1_001__paired__contig_8, whole genome shotgun sequence (317656 bp)
Overview 1 RT 1: 285138-288484 bp Neighborhood of RT #1 [285138, 289392] HTH_19 RVT-Retrons Ser_Recombinase Recombinase Zn_ribbon_recom Feature: gene Location: 285138-285389 bp Feature: gene Location: 285427-285720 bp Feature: domain Description: HTH_19 Location: 285439-285601 bp Feature: domain Description: HTH_19 Location: 2 85439-2 85601 bp Feature: gene Location: 285755-286546 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 285836-286373 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2 85836-2 86373 bp Feature: gene Location: 286926-287132 bp Feature: gene Location: 287443-289392 bp Feature: domain Description: Ser_Recombinase Location: 287455-287863 bp Feature: domain Description: Ser_Recombinase Location: 2 87455-2 87863 bp Feature: domain Description: Recombinase Location: 287959-288259 bp Feature: domain Description: Recombinase Location: 2 87959-2 882 59 bp Feature: domain Description: Zn_ribbon_recom Location: 288319-288484 bp Feature: domain Description: Zn_ribbon_recom Location: 2 88319-2 88484 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_19 (pfam12844), RVT-Retrons, Ser_Recombinase (cl02788), Recombinase (pfam07508), Zn_ribbon_recom (pfam13408)